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Genomic Relationship Between Brochothrix campestris and Its Phages: A Cross-Replicon and Interspecies Perspective
Sabrina A Attéré1,2, Laurie C Piché1,2, Antony T Vincent1,2
1Département des Sciences Animales, Faculté des Sciences de L'agriculture et de L'alimentation, Université Laval, Quebec, QC G1V 0A6, Canada.
Complete genome sequencing of Brochothrix campestris reveals the potential role of phages in its evolution. This study provides insights into the bacterium
Area of Science:
- Microbiology
- Genomics
- Bacteriology
Background:
- Brochothrix campestris is related to food spoilage and human pathogen bacteria.
- B. campestris produces bacteriocin brochocin-C, inhibiting pathogen growth.
- Phages are implicated in the evolution of related bacteria, but their role in B. campestris is unknown due to limited genomic data.
Purpose of the Study:
- To obtain complete, high-quality genome sequences of B. campestris.
- To investigate the role of phages in B. campestris evolution.
- To identify mobile genetic elements and their potential impact on B. campestris.
Main Methods:
- DNA sequencing of B. campestris type strain DSM 4712 using Oxford Nanopore and Illumina technologies.
- Genome assembly to obtain complete genomic information.
- Bioinformatic analysis to identify plasmids, phages, and genomic islands.
Main Results:
- Complete genome sequences of B. campestris were successfully generated.
- A plasmid and a phage-plasmid were identified within the genome.
- Genomic islands, including one with brochocin genes, were detected, suggesting horizontal gene transfer.
Conclusions:
- Phages likely play a significant role in the evolutionary history of B. campestris.
- The presence of a phage-plasmid and genomic islands highlights mobile genetic elements' importance.
- Further research on Brothothrix-phage interactions is crucial for understanding their biology.
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