Transcription, Maturation and Degradation of Mitochondrial RNA: Implications for Innate Immune Response

Chaojun Yan1, Jianglong Yu2, Hao Lyu1

  • 1National "111" Center for Cellular Regulation and Molecular Pharmaceutics, Key Laboratory of Fermentation Engineering (Ministry of Education), Cooperative Innovation Center of Industrial Fermentation (Ministry of Education & Hubei Province), Hubei Key Laboratory of Industrial Microbiology, Hubei University of Technology, Wuhan 430068, China.

Biomolecules
|October 29, 2025
PubMed

Insights

Mitochondrial RNA (mtRNA) accumulation triggers innate immunity. Aberrant mitochondrial double-stranded RNA (mt-dsRNA) acts as a damage-associated molecular pattern (DAMP), driving inflammation in diseases like autoimmune disorders and viral infections.

Area of Science:

  • Mitochondrial biology
  • Innate immunity
  • Molecular mechanisms of inflammation

Background:

  • Mitochondria play a key role in cellular processes, including innate immunity regulation.
  • Mitochondrial nucleic acids, such as mitochondrial RNA (mtRNA), can function as damage-associated molecular patterns (DAMPs).
  • Aberrant accumulation of mtRNA is linked to immune activation.

Purpose of the Study:

  • To synthesize current understanding of mitochondrial RNA (mtRNA) biology and its connection to immune activation.
  • To explore the origin, metabolism, and degradation of mtRNA.
  • To review the role of mtRNA in disease pathology.

Main Methods:

  • Review of current literature on mitochondrial RNA biology and innate immunity.
  • Focus on mtRNA metabolism, including transcription, maturation, and degradation.
  • Discussion of regulatory factors like PNPT1 and disease implications.

Main Results:

  • Dysregulation of mtRNA metabolism leads to the accumulation of mitochondrial double-stranded RNA (mt-dsRNA).
  • mt-dsRNA can escape mitochondria into the cytosol, acting as DAMPs to trigger immune responses.
  • Key factors like PNPT1 regulate mt-dsRNA levels to prevent inappropriate immune activation.

Conclusions:

  • Aberrant mtRNA accumulation, particularly mt-dsRNA, is a significant driver of inflammation.
  • mt-dsRNA-driven inflammation is implicated in autoimmune disorders, cellular senescence, and viral infections.
  • Further research is needed to understand mt-dsRNA release mechanisms.

Related Concept Videos

RNA Stability01:53

RNA Stability

Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
35.6K
mRNA Stability and Gene Expression02:51

mRNA Stability and Gene Expression

The structure and stability of mRNA molecules regulates gene expression, as mRNAs are a key step in the pathway from gene to protein. In eukaryotes, the half-life of mRNA varies from a few minutes up to several days. mRNA stability is essential in growth and development. The absence of the proteins regulating its stability, such as tristetraprolin in mice, can cause systemic issues, including bone marrow overgrowth, inflammation, and autoimmunity.
Cis-acting Elements involved in mRNA stability
6.5K
mRNA Stability and Gene Expression02:51

mRNA Stability and Gene Expression

3.4K
Translational Regulation01:29

Translational Regulation

Translational regulation in prokaryotes ensures efficient protein synthesis by controlling ribosome access to mRNA. This regulation is mediated by secondary RNA structures, including translational riboswitches, RNA thermometers, and small RNAs (sRNAs), which respond to intracellular and environmental signals to modulate gene expression.Translational RiboswitchesRiboswitches in the leader region of mRNAs can regulate translation by altering the accessibility of the Shine-Dalgarno (SD) sequence,...
523
Regulation of Expression at Multiple Steps01:23

Regulation of Expression at Multiple Steps

The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
1.3K
MicroRNAs01:22

MicroRNAs

MicroRNA (miRNA) are short, regulatory RNA transcribed from introns—non-coding regions of a gene—or intergenic regions—stretches of DNA present between genes. Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After...
23.9K