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Statistical Methods for Multi-Omics Analysis in Neurodevelopmental Disorders: From High Dimensionality to Mechanistic
Manuel Airoldi1, Veronica Remori1, Mauro Fasano1,2
1Department of Science and High Technology, University of Insubria, 22100 Como, Italy.
Biomolecules
|October 29, 2025
Summary
Statistical methods for analyzing complex omics data are crucial for understanding neurodevelopmental disorders (NDDs). This review highlights how integrative multi-omics approaches reveal molecular signatures, advancing precision medicine for NDDs.
Area of Science:
- Genetics
- Neuroscience
- Bioinformatics
Background:
- Neurodevelopmental disorders (NDDs) like autism and ADHD are complex and affect millions globally.
- High-throughput omics technologies provide insights into genetic and molecular underpinnings of NDDs.
- Analyzing high-dimensional omics data presents significant statistical challenges.
Purpose of the Study:
- To provide a comprehensive overview of statistical frameworks for analyzing high-dimensional omics datasets in NDDs.
- To illustrate how these methods reveal convergent molecular signatures across different omics layers.
- To discuss emerging strategies for advancing mechanistic understanding and precision medicine in NDDs.
Main Methods:
- Review of statistical frameworks including univariate/multivariate models, penalized regression, sparse canonical correlation analysis, partial least squares.
- Overview of integrative multi-omics methods like DIABLO, similarity network fusion, and MOFA.
- Illustration of methods using transcriptomic, proteomic, and metabolomic data from human cohorts and experimental models.
Main Results:
- Statistical approaches have identified convergent molecular signatures in NDDs, including synaptic, mitochondrial, and immune dysregulation.
- These signatures are consistently observed across transcriptomic, proteomic, and metabolomic data layers.
- Emerging strategies like single-cell omics and machine learning integration show promise.
Conclusions:
- Integrative multi-omics analysis, supported by robust statistical methods, is essential for understanding NDD mechanisms.
- These approaches can translate complex molecular patterns into valuable biomarkers and therapeutic targets.
- The findings pave the way for advancing precision medicine in the field of neurodevelopmental disorders.

