Defect of MLH1 expression sensitized esophageal squamous cell carcinoma cells to Polθ inhibitor

Bo Zhou1, Meiying Zhang1, Cheng Zhu1

  • 1Department of Gastroenterology & Hepatology, The First Medical Center, Chinese PLA General Hospital, Beijing, China.

Epigenomics
|October 30, 2025
PubMed
Abstract

Insights

MLH1 methylation is a poor prognostic marker in esophageal cancer, linked to poorer survival. Deleting MLH1 sensitizes cancer cells to a specific inhibitor, offering potential therapeutic strategies.

Area of Science:

  • Oncology
  • Molecular Biology
  • Genetics

Background:

  • MLH1 (MutL Homolog 1) is a key mismatch repair gene.
  • The role of MLH1 in DNA double-strand break (DSB) repair is not fully understood.
  • Large-scale studies on MLH1 methylation in esophageal cancer are limited.

Purpose of the Study:

  • To investigate the prevalence and prognostic significance of MLH1 methylation in esophageal cancer.
  • To elucidate the role of MLH1 in DNA repair pathways.
  • To explore potential therapeutic vulnerabilities associated with MLH1 deficiency.

Main Methods:

  • Analysis of MLH1 methylation in 1018 esophageal cancer samples using methylation-specific PCR.
  • Western blot analysis and CRISPR/Cas9 gene editing to study MLH1 function.
  • Correlation analysis with clinical parameters and survival data.

Main Results:

  • MLH1 methylation was found in 3.93% of esophageal cancer cases.
  • MLH1 methylation correlated significantly with poor tumor differentiation, male gender, smoking, and larger tumor size.
  • Patients with MLH1 methylation had significantly shorter overall survival (OS).
  • MLH1 methylation was identified as an independent poor prognostic marker.
  • MLH1 influences DNA repair pathways, including NHEJ and MMEJ, and its deletion sensitizes cells to novobiocin, a Polθ inhibitor.

Conclusions:

  • MLH1 methylation is a significant negative prognostic factor in esophageal cancer.
  • MLH1 is involved in regulating DNA double-strand break repair pathways.
  • Targeting Polθ with inhibitors like novobiocin may be effective in MLH1-deficient esophageal cancers.

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