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Updated: May 16, 2026

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Genotypic Inference of HIV-1 Tropism Using Population-based Sequencing of V3
Published on: December 27, 2010
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[Three-Year Multicenter Analysis of HIV Infection Diagnostic Data]
Aysel Karataş1, Mert Ahmet Kuşkucu2, Seyhan Ördekçi3
1Sağlık Bilimleri Üniversitesi Prof. Dr. Cemil Taşcıoğlu Şehir Hastanesi, Tıbbi Mikrobiyoloji Laboratuvarı, İstanbul.
Mikrobiyoloji Bulteni
|October 30, 2025
Summary
Türkiye updated its HIV testing algorithm in 2019. The study found increased use of rapid HIV tests and decreased HIV nucleic acid amplification testing (NAT) due to COVID-19, requiring ongoing HIV epidemic monitoring.
Area of Science:
- Clinical Medicine
- Infectious Diseases
- Public Health
Background:
- Türkiye adopted the updated three-step human immunodeficiency virus (HIV) testing algorithm in 2019, aligning with CDC guidelines.
- The study addresses the need to understand the current landscape of HIV diagnosis in Türkiye.
Purpose of the Study:
- To evaluate the performance of the current HIV testing algorithm in Türkiye.
- To identify challenges and propose solutions for HIV diagnosis.
- To assess the impact of the updated algorithm and external factors like the COVID-19 pandemic on HIV testing practices.
Main Methods:
- A multicenter, multidisciplinary approach was used, surveying 12 HIV testing centers with a 57-question survey.
- Data from 2018-2020 included HIV enzyme-linked immunosorbent assay (ELISA) tests, reactive rates, confirmatory test results, and HIV nucleic acid amplification tests (NAT).
- Analysis focused on trends in Western Blot (WB) utilization versus HIV-1/2 antibody differential rapid tests and HIV-1 RNA testing.
Main Results:
- Between 2018-2020, anti-HIV ELISA tests showed stable confirmed HIV rates (0.21-0.25%) with a slight increase in repeat reactivity (0.48-0.70%).
- Western Blot (WB) utilization decreased significantly (25.77% to 9.86%), while HIV-1/2 antibody differential rapid tests increased (25.72% to 45.78%), indicating a shift in confirmatory methods.
- HIV-1 NAT utilization saw a significant decrease in 2020 (46.31%) compared to 2019 (97.98%), attributed to resource reallocation towards COVID-19 testing.
Conclusions:
- The rapid HIV-1/2 antibody differential test is increasingly effective in HIV diagnosis in Türkiye.
- The decline in HIV-1 NAT use, potentially linked to the COVID-19 pandemic, necessitates close monitoring of the HIV epidemic.
- Further investigation is needed to understand the long-term implications of these shifts in testing algorithms and resource allocation.

