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RAS-GTP Inhibition Overcomes Acquired Resistance to KRASG12C Inhibitors Mediated by Oncogenic and Wild-Type RAS
Hitendra S Solanki1, Harshit Shah2, Denis Imbody1
1Department of Thoracic Oncology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, Florida.
Abstract:
Small-molecule KRASG12C(OFF) inhibitors that bind to the inactive GDP-bound state of KRAS have demonstrated efficacy in patients with KRASG12C-mutant tumors, yet responses tend to be transient because of emergence of on-treatment resistance. Recently, RAS(ON) G12C-selective inhibitors, which bind to the active GTP-bound state of RAS, were described, and elironrasib is undergoing evaluation in multiple clinical trials. In this study, we generated resistant cell lines and patient-derived xenograft models to KRASG12C(OFF) and RAS(ON) G12C-selective inhibitors and interrogated resistance mechanisms using a multiomics strategy consisting of phosphoproteomics, whole-exome sequencing, and RNA sequencing combined with functional testing using small-molecule and CRISPR screens and RAS(ON) inhibitors being evaluated in clinical trials. Two models reactivated RAS signaling, either via KRASG12C gene amplification or NRASG13R mutation, and were vulnerable to dual inhibition by RAS(ON) G12C-selective and RAS(ON) multiselective inhibitors, RMC-4998 and RMC-7977. Two models, which lacked any discernable genomic alteration, acquired resistance associated with increased receptor tyrosine kinase activity and downstream persistent RAS activity and were sensitive to RAS-GTP inhibition by RMC-7977. Finally, one model displayed epithelial-mesenchymal transition, loss of RAS dependence, and acquired reliance on cell-cycle kinases and proteins associated with DNA damage response. This work highlights KRASG12C-selective inhibitor resistant states that parallel and complement clinical findings and demonstrate that a large subset could be overcome with a RAS(ON) multi-selective inhibitor as a stand-alone agent or in combination with other therapies.
Significance:
Multi-omic characterization of resistance mechanisms to KRASG12C-selective inhibitors in non-small cell lung cancer provides insights that could inform precision medicine-based therapeutic approaches for improving the treatment of KRASG12C mutant tumors. See related article by Stern et al., p. 485.
Insights
KRASG12C inhibitors show initial efficacy but resistance develops. New strategies targeting both inactive and active RAS states, including dual inhibition and multi-selective inhibitors, can overcome resistance mechanisms in KRAS-mutant tumors.
Area of Science:
- Oncology
- Molecular Biology
- Drug Discovery
Background:
- KRASG12C inhibitors targeting the inactive GDP-bound state are effective but face transient responses due to resistance.
- RAS(ON) G12C-selective inhibitors targeting the active GTP-bound state, like elironrasib, are emerging as new therapeutic options.
Purpose of the Study:
- To investigate resistance mechanisms to both KRASG12C(OFF) and RAS(ON) G12C-selective inhibitors.
- To identify therapeutic strategies to overcome acquired resistance in KRAS-mutant cancers.
Main Methods:
- Generation of resistant cell lines and patient-derived xenograft models.
- Multi-omics analysis including phosphoproteomics, whole exome sequencing, and RNA-sequencing.
- Functional validation using small molecule and CRISPR screens, and RAS(ON) inhibitors.
Main Results:
- Two models reactivated RAS signaling via KRASG12C amplification or NRASG13R mutation, responding to dual RAS(ON) G12C-selective and multi-selective inhibition (RMC-4998, RMC-7977).
- Two models developed resistance via increased receptor tyrosine kinase activity, showing sensitivity to RAS-GTP inhibition by RMC-7977.
- One model exhibited epithelial-mesenchymal transition and reliance on cell cycle kinases and DNA damage response proteins.
Conclusions:
- Identified diverse resistance mechanisms to KRASG12C inhibitors, mirroring clinical observations.
- Demonstrated that RAS(ON) multi-selective inhibitors can overcome a significant subset of resistance, as monotherapy or in combination.
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