Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Multi-species Conserved Sequences02:51

Multi-species Conserved Sequences

4.6K
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
4.6K
Genomics02:02

Genomics

39.6K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
39.6K
Bioremediation00:46

Bioremediation

22.0K
Bioremediation is the use of prokaryotes, fungi, or plants to remove pollutants from the environment. This process has been used to remove harmful toxins in groundwater as a byproduct of agricultural run-off and also to clean up oil spills.
22.0K
Synthetic Biology02:55

Synthetic Biology

5.5K
Synthetic biology is an interdisciplinary science that involves using principles from disciplines such as engineering, molecular biology, cell biology, and systems biology. It involves remodeling existing organisms from nature or constructing completely new synthetic organisms for applications such as protein or enzyme production, bioremediation, value-added macromolecule production, and the addition of desirable traits to crops, to name a few.
Golden rice
Golden rice is a genetically modified...
5.5K
Modern Molecular Taxonomy01:29

Modern Molecular Taxonomy

574
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
574
Proteomics01:33

Proteomics

9.3K
A proteome is the entire set of proteins that a cell type produces. We can study proteomes using the knowledge of genomes because genes code for mRNAs, and the mRNAs encode proteins. Although mRNA analysis is a step in the right direction, not all mRNAs are translated into proteins.
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term...
9.3K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

The patterns of microbial community distribution and co-occurrence in water columns and sediments of Haima cold seep.

Microbiology spectrum·2026
Same author

Zooplankton Metabolism Shapes Molecular Composition of Dissolved Organic Matter in Coastal Waters.

Environmental science & technology·2026
Same author

Corals and Reef-Dwelling Fish Regulate Carbon Storage and Cycling Processes in Coral Reef Ecosystems.

Advanced science (Weinheim, Baden-Wurttemberg, Germany)·2026
Same author

The response of biofilms to nutrient environments and their potential in biogeochemical cycles.

Microbiological research·2026
Same author

Marine plastisphere expands the ecological niche and evolutionary dynamics of nrfA-dependent nitrite ammonifying bacteria.

Water research·2026
Same author

Dispersal and isolation of the scaly-foot snail across abyssal insular habitats and through time.

Current biology : CB·2026
Same journal

Correction to 'scSuperAnnotator: A platform for benchmarking comparison and visualizing automated cellular annotation methods for scRNA-seq data'.

Nucleic acids research·2026
Same journal

Correction to 'Differentiable partition function calculation for RNA'.

Nucleic acids research·2026
Same journal

Deployment of non-canonical splicing in tunicate genomes is mediated by divergent U2AF function and changing m6A modification in U1 and U6 snRNA.

Nucleic acids research·2026
Same journal

Bacillus subtilis DnaB forms multiple protein-protein interactions essential for DNA replication initiation.

Nucleic acids research·2026
Same journal

Multiple forms of protein-protein and DNA binding are exhibited by BrxC from the BREX phage restriction system.

Nucleic acids research·2026
Same journal

Biosynthesis of glycosylated 5-hydroxycytosine in the DNA of diverse viruses.

Nucleic acids research·2026
See all related articles

Related Experiment Video

Updated: Jan 12, 2026

An Aquatic Microbial Metaproteomics Workflow: From Cells to Tryptic Peptides Suitable for Tandem Mass Spectrometry-based Analysis
08:09

An Aquatic Microbial Metaproteomics Workflow: From Cells to Tryptic Peptides Suitable for Tandem Mass Spectrometry-based Analysis

Published on: September 15, 2015

9.2K

DOO: integrated multi-omics resources for deep ocean organisms.

Jiajie She1,2, Pei-Yuan Qian1,2, Longjun Wu2,3

  • 1Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Nansha, Guangzhou 510000, China.

Nucleic Acids Research
|October 31, 2025
PubMed
Summary
This summary is machine-generated.

The Deep Ocean Omics database integrates multi-omics data for 68 deep-sea species. This resource aids in understanding deep ocean biodiversity, evolution, and genetic adaptations to extreme environments.

More Related Videos

A Multi-Omics Extraction Method for the In-Depth Analysis of Synchronized Cultures of the Green Alga Chlamydomonas reinhardtii
07:51

A Multi-Omics Extraction Method for the In-Depth Analysis of Synchronized Cultures of the Green Alga Chlamydomonas reinhardtii

Published on: August 8, 2019

8.1K
Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved Non-model Organisms
10:41

Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved Non-model Organisms

Published on: May 9, 2017

9.6K

Related Experiment Videos

Last Updated: Jan 12, 2026

An Aquatic Microbial Metaproteomics Workflow: From Cells to Tryptic Peptides Suitable for Tandem Mass Spectrometry-based Analysis
08:09

An Aquatic Microbial Metaproteomics Workflow: From Cells to Tryptic Peptides Suitable for Tandem Mass Spectrometry-based Analysis

Published on: September 15, 2015

9.2K
A Multi-Omics Extraction Method for the In-Depth Analysis of Synchronized Cultures of the Green Alga Chlamydomonas reinhardtii
07:51

A Multi-Omics Extraction Method for the In-Depth Analysis of Synchronized Cultures of the Green Alga Chlamydomonas reinhardtii

Published on: August 8, 2019

8.1K
Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved Non-model Organisms
10:41

Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved Non-model Organisms

Published on: May 9, 2017

9.6K

Area of Science:

  • Marine Biology
  • Genomics
  • Bioinformatics

Background:

  • The deep ocean is a vast, underexplored environment with extreme conditions.
  • Studying deep-sea life offers insights into genetic and molecular adaptations.
  • A centralized resource for deep ocean multi-omics data was previously unavailable.

Purpose of the Study:

  • To introduce the Deep Ocean Omics (DOO) database, a comprehensive multi-omics atlas for deep-sea organisms.
  • To provide a centralized platform for accessing and analyzing diverse omics data from the deep ocean.
  • To facilitate research into the biodiversity, evolution, and adaptation of deep-sea life.

Main Methods:

  • Integrated omics data from 68 species across seven phyla.
  • Included genomic, transcriptomic (bulk and single-cell), and metagenomic datasets.
  • Developed functional and comparative analysis toolkits within the database.

Main Results:

  • The DOO database hosts 72 genomes, 950 bulk transcriptomes, 15 single-cell transcriptomes, and 1112 metagenomes.
  • Provides systematic genomic information, including assembly, phylogeny, gene annotation, and gene clusters.
  • Offers co-expression networks and synteny analyses for evolutionary insights.

Conclusions:

  • DOO is the first comprehensive multi-omics resource for deep ocean organisms.
  • It serves as a pivotal platform for uncovering multi-omics underpinnings of deep-sea life.
  • Facilitates a deeper understanding of deep ocean biodiversity, evolution, and adaptation to extreme conditions.