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Updated: Jan 12, 2026

Integration of Bioinformatics Approaches and Experimental Validations to Understand the Role of Notch Signaling in Ovarian Cancer
Published on: January 12, 2020
Notch pathway defines an aggressive and immune-suppressive phenotype associated with checkpoint inhibitor resistance
Yang Luo1, Roushu Wang2, Yu Xu3
1Department of Gastrointestinal Surgery, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.
Abstract:
The Notch pathway regulates the homeostasis and tumorigenesis of gastrointestinal epithelium. Given its roles in cancer stem cell capacity and cancer immunity, we hypothesized that Notch activation can predict poor prognosis and resistance to immune checkpoint inhibitors (ICIs) in gastrointestinal adenocarcinoma (GIAC). The mRNA expression and genomic alterations of Notch pathway were characterized in esophagus (ESAD), stomach (STAD), colon (COAD), or rectum (READ) adenocarcinomas from The Cancer Genome Atlas (TCGA) dataset. The prognostic model (mRNA-score) was constructed using the TCGA dataset (the training set) and was validated in 3 independent sets (GSE19417 [ESAD], GSE84437 [STAD], and GSE40967 [COAD]). The associations of the mRNA-score with drug sensitivity, immune cell infiltration, and immunotherapy efficacy were, respectively, analyzed using the Genomics of Drug Sensitivity in Cancer (GDSC) database, the TCGA dataset, and multiple clinical cohorts including GSE165252, PRJEB25780, IMvigor210, and CheckMate-009/010/025. Notch pathway genes exhibited conserved genomic/transcriptomic features across four GIAC subtypes. Three pan-GIAC clusters were determined by unsupervised clustering, and the cluster with higher expression of the Notch pathway genes had shorter overall survival (OS), immunosuppressive microenvironment, and higher scores of the signatures concerning angiogenesis, cell cycle, PI3K-AKT-mTOR, TGF-β, glycolysis, etc. A prognostic algorithm (mRNA-score) was constructed, which was correlated with poor OS in the training set (TCGA, P < 0.001) and three validation sets (GSE19417, P = 0.025; GSE84437, P = 0.001, GSE40967, P = 0.007). A high mRNA-score was linked with more "resting"/ "anti-inflammatory" rather than "activated"/ "pro-inflammatory" tumor-infiltrating immune cells and ICI resistance in GIACs (GSE165252, P = 0.047; PRJEB25780, P = 0.047) and other solid tumors such as urothelial carcinoma and clear cell renal cell carcinoma. Our findings demonstrate the utility of the Notch pathway in predicting prognosis and ICI resistance. Further studies are warranted to explore the efficacy of Notch inhibitors as immunotherapeutic adjuvants to overcome ICI resistance.
Insights
High Notch pathway activation in gastrointestinal adenocarcinoma (GIAC) predicts poor prognosis and resistance to immune checkpoint inhibitors (ICIs). This suggests Notch inhibitors could enhance immunotherapy effectiveness.
Area of Science:
- Oncology
- Molecular Biology
- Immunology
Background:
- The Notch pathway is crucial for gastrointestinal epithelium homeostasis and tumorigenesis.
- Its role in cancer stem cells and immunity suggests a link to prognosis and treatment response in gastrointestinal adenocarcinoma (GIAC).
Purpose of the Study:
- To investigate if Notch pathway activation predicts poor prognosis and resistance to immune checkpoint inhibitors (ICIs) in GIAC.
- To develop a prognostic model based on Notch pathway gene expression.
Main Methods:
- Analyzed Notch pathway mRNA expression and genomic alterations in TCGA datasets (ESAD, STAD, COAD, READ).
- Constructed and validated a prognostic mRNA-score using TCGA and independent datasets.
- Assessed associations with drug sensitivity, immune cell infiltration, and ICI efficacy in multiple cohorts.
Main Results:
- Notch pathway genes showed conserved features across GIAC subtypes.
- Higher Notch pathway expression correlated with shorter overall survival (OS), an immunosuppressive microenvironment, and poorer prognosis.
- The validated mRNA-score predicted poor OS and ICI resistance in GIAC and other solid tumors.
Conclusions:
- Notch pathway activation is a significant predictor of poor prognosis and ICI resistance in GIAC.
- The developed mRNA-score algorithm can identify patients likely to benefit from or resist immunotherapy.
- Targeting the Notch pathway may offer a strategy to overcome ICI resistance in cancer treatment.
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