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An interpretable and balanced machine learning framework for Parkinson's disease prediction using feature engineering
Nasim Mahmud Nayan1, Al Mamun Rana2, Md Monirul Islam3
1Department of Computer Science and Engineering, University of Information Technology and Sciences (UITS), Dhaka, Bangladesh.
This study introduces an enhanced machine learning (ML) framework for predicting Parkinson's disease (PD). Combining data balancing, feature selection, and explainable AI, the framework offers a more accurate and interpretable diagnostic tool for early PD detection.
Area of Science:
- Neurology
- Computer Science
- Biomedical Engineering
Background:
- Parkinson's disease (PD) is a progressive neurological disorder with diagnostic challenges.
- Machine learning (ML) offers potential for precise and efficient PD prediction.
- Early and accurate diagnosis of PD is crucial for patient management.
Purpose of the Study:
- To develop an enhanced ML framework for improved PD prediction.
- To integrate data balancing, feature selection, and explainable AI (XAI) techniques.
- To enhance the fairness, performance, and interpretability of PD diagnostic models.
Main Methods:
- Evaluation of nine ML algorithms on clinical and voice features.
- Application of Synthetic Minority Oversampling Technique (SMOTE) and NearMiss for class imbalance.
- Utilized Featurewiz, Tree based Feature Importance, and chi-square for feature selection.
- Employed SHAP and LIME for XAI to interpret model decisions.
Main Results:
- The KNN model with SMOTE achieved 92% accuracy, 0.94 F1-score, and 0.95 G-Mean, indicating balanced and reliable PD detection.
- Some models showed higher accuracy (up to 97%) on imbalanced data but lacked sensitivity and balance.
- Feature selection identified key voice biomarkers like Pitch Period Entropy (PPE) and Noise-to-Harmonic Ratio (NHR).
Conclusions:
- Combining SMOTE, feature engineering, and XAI significantly improves ML model fairness, performance, and interpretability for PD prediction.
- The proposed framework provides an accurate and interpretable ML-based diagnostic tool.
- This research supports early PD diagnosis and enhances patient management strategies.
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