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Detection of EGFR gene mutations in glioblastoma: Utilizing information complexity in developing AI-based decision
Neslihan Gökmen1, Ozan Kocadağlı2, Chunlei Liu3
1Koç University, College of Engineering, Computer Engineering Department, Turkey.
Computers in Biology and Medicine
|November 2, 2025
Summary
This study developed an AI system using MRI scans to classify EGFR mutations in glioblastoma (GBM) patients, improving non-invasive diagnosis. DenseNet-121 model achieved high accuracy, reducing the need for risky brain biopsies.
Area of Science:
- Neuro-oncology
- Artificial Intelligence in Medicine
- Medical Imaging Analysis
Background:
- Glioblastoma (GBM) is an aggressive brain cancer with significant heterogeneity.
- Epidermal Growth Factor Receptor (EGFR) gene mutations are critical prognostic markers in GBM.
- Current diagnostic methods like brain biopsies carry risks and potential sampling errors.
Purpose of the Study:
- To introduce an AI-based decision support system (DSS) for non-invasive EGFR mutation classification in GBM.
- To automate tumor segmentation from MRI scans for improved diagnostic accuracy.
- To evaluate the performance of deep learning models for predicting EGFR mutations using MRI data.
Main Methods:
- Development of a DSS utilizing deep neural networks (Inception ResNet-v2, DenseNet-121, ResNet-50).
- Training and testing models on a GBM dataset with three MRI input types: expert segmented, without segmentation, and without tumor.
- Application of Information Criteria (IC) for model selection to balance performance and complexity.
Main Results:
- DenseNet-121 demonstrated superior performance across all MRI input types, achieving high accuracy (up to 0.952).
- The model exhibited the highest precision and recall, particularly with expert-segmented MRI inputs.
- Multivariate statistical analysis confirmed significant differences in model performances, validating the chosen approach.
Conclusions:
- The AI-based DSS effectively classifies EGFR mutations in GBM patients using MRI data.
- Integrating information criteria enhances the robustness and interpretability of deep learning models in medical imaging.
- This non-invasive approach holds promise for improving GBM diagnosis and patient management, reducing reliance on biopsies.

