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From Molecules to Materials: Engineering New Ionic Liquid Crystals Through Halogen Bonding
Published on: March 24, 2018
Solvation strategies for free-energy calculations in a halogen-bonded complex: implicit, explicit, and machine
Jaroslav Vacek1,2,3, Dávid Vrška1,4, Debashree Manna1
1Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences Flemingovo náměstí 542/2 160 00 Prague Czech Republic debashree.manna@uochb.cas.cz rabindranath.lo@uochb.cas.cz pavel.hobza@uochb.cas.cz.
Investigating solvent models for halogen bonding, this study finds explicit solvation essential for polar solvents. Machine learning perturbation theory enhances accuracy beyond standard methods for molecular iodine-tetramethylthiourea complexes.
Area of Science:
- Computational chemistry
- Supramolecular chemistry
- Physical chemistry
Background:
- Halogen bonding is crucial in various chemical systems.
- Accurate solvation models are needed for predicting binding energies.
- Molecular iodine and tetramethylthiourea form a relevant model complex.
Purpose of the Study:
- To evaluate different solvent models for halogen-bonded complexes.
- To identify efficient and accurate computational approaches for solvation.
- To reproduce experimental trends in binding free energies.
Main Methods:
- Implicit and explicit solvent models were compared.
- Micro-solvation and ONIOM methods were explored.
- Periodic metadynamics simulations were performed.
- Machine learning perturbation theory was applied.
Main Results:
- Implicit models are accurate in low/moderate polarity solvents but fail in high-polarity ones.
- Explicit solvent representations are necessary for polar media.
- Periodic metadynamics offers accuracy but is computationally intensive and limited to GGA functionals.
- Machine learning perturbation theory improved accuracy beyond GGA.
Conclusions:
- Accurate modeling of halogen bonding in polar solvents requires explicit solvation.
- Machine learning perturbation theory provides a computationally feasible route to high-accuracy free energy calculations.
- This work advances the understanding of solvation effects in non-covalent interactions.
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