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Using item response theory as a methodology to impute categorical missing values.

Adrienne Kline1,2,3, Yuan Luo4,5

  • 1Department of Surgery, Northwestern University, Chicago, USA. adrienne.kline@northwestern.edu.

Scientific Reports
|November 5, 2025
PubMed
Summary
This summary is machine-generated.

Item Response Theory (IRT) for categorical imputation effectively addresses missing data, outperforming methods like kNN and MICE. This approach offers a robust alternative for improving data quality in machine learning and statistical analysis.

Keywords:
Categorical imputationItem response theory (IRT)Missing at random (MAR)Missing completely at random (MCAR)

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Area of Science:

  • Data Science
  • Statistics
  • Machine Learning

Background:

  • Missing data is a common challenge in datasets, limiting statistical inference and model development.
  • Existing imputation techniques have varying impacts on downstream analyses, including clinical score calculation and model testing.

Purpose of the Study:

  • To evaluate an Item Response Theory (IRT) based approach for categorical data imputation.
  • To compare the IRT method against established machine learning imputation techniques such as k-nearest neighbors (kNN), multiple imputed chained equations (MICE), and DataWig.

Main Methods:

  • The IRT imputation method was applied to three datasets with ordinal, nominal, and binary categories.
  • Datasets were manipulated to vary missing data proportions and systematization.
  • Performance was assessed by accuracy in value reproduction and predictive performance post-imputation.

Main Results:

  • The IRT approach demonstrated strong performance in categorical imputation.
  • It outperformed several current multiple imputation methods under various conditions.
  • The method showed particular promise in reproducing missing values and enhancing predictive accuracy.

Conclusions:

  • Item Response Theory for categorical imputation provides a theoretically sound and effective alternative to existing methods.
  • Its probabilistic approach to filling missing values offers advantages for data quality and subsequent analyses.
  • The IRT method is a viable option for researchers dealing with missing categorical data.