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Evaluation of a New Inclusive Next-Generation Synthetic Face Tool for Dysmorphology
Ludovic Benichou1,2,3, Luan Breton1,2, Nicolas Garcelon1
1Data Science, Imagine Institute, INSERM UMR1163, Paris, France.
American Journal of Medical Genetics. Part A
|November 6, 2025
Summary
Synthetic facial images generated using AI can improve the accuracy and inclusivity of rare genetic syndrome diagnostic tools. This approach addresses data limitations, especially for underrepresented groups, enhancing AI performance in dysmorphology.
Area of Science:
- Artificial Intelligence
- Medical Imaging
- Genetics
Background:
- Facial analysis tools for rare genetic syndromes face accuracy limitations due to small, biased datasets, particularly for ultra-rare conditions and underrepresented ethnicities.
- Synthetic facial images offer a potential solution to augment training data and promote equitable diagnostic performance.
Purpose of the Study:
- To develop and evaluate a synthetic face generation pipeline using advanced AI models to enhance rare genetic syndrome diagnosis.
- To assess the impact of synthetic data augmentation on the accuracy and inclusivity of AI-driven phenotyping algorithms.
Main Methods:
- A synthetic face generation pipeline was created using diffusion models (DreamShaper XL Turbo) with LoRA-based domain adaptation and ControlNet for pose conditioning.
- 4,432 synthetic faces across ten rare syndromes were generated, balanced for age, sex, and ethnicity.
- The performance of an ArcFace R-100 phenotyping algorithm was evaluated using real and synthetic data in various machine learning configurations.
Main Results:
- Synthetic faces exhibited high phenotypic realism, achieving top-1 accuracy of 0.823 and AUC of 0.991.
- Augmenting real training datasets with synthetic images improved accuracy from 0.766 to 0.869 and AUC from 0.988 to 0.993.
- Significant performance gains were observed for ultra-rare syndromes and Asian individuals, highlighting improved inclusivity.
Conclusions:
- Diffusion-generated synthetic faces can enhance the inclusivity and accuracy of AI-based dysmorphology tools.
- Synthetic datasets offer a scalable and ethical approach to overcome data scarcity in rare disease diagnostics.
- This technology has potential applications in clinical training, telemedicine, and improving healthcare in underserved regions.

