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Published on: August 9, 2017
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ZFHX3-associated neural tube defect.
Dibyendu Dutta1, Erfan Aref-Eshghi2, Ria Garg3
1Medicine (Hematology and Oncology), SUNY Upstate Medical University, Syracuse, New York, USA.
BMJ Case Reports
|November 6, 2025
Summary
The zinc finger homeobox 3 (ZFHX3) gene may be linked to neural tube defects (NTDs) and congenital anomalies. A patient with a ZFHX3 variant showed spina bifida and other developmental issues, suggesting a broader ZFHX3 disorder spectrum.
Area of Science:
- Genetics
- Developmental Biology
- Medical Genetics
Background:
- The zinc finger homeobox 3 (ZFHX3) gene is crucial for neurodevelopment and organogenesis.
- ZFHX3 haploinsufficiency is associated with intellectual disability, epilepsy, and neurodevelopmental defects.
- The role of ZFHX3 in neural tube defects (NTDs) and related congenital structural anomalies remains uncharacterized.
Purpose of the Study:
- To investigate the potential role of ZFHX3 in NTDs and congenital structural anomalies.
- To report a novel case of a patient with a de novo ZFHX3 variant and associated phenotypic features.
Main Methods:
- Whole exome sequencing was performed to identify genetic variants.
- Clinical phenotyping of the proband was conducted, including assessment of neurological and structural anomalies.
Main Results:
- A de novo heterozygous ZFHX3 variant (c.5876 A>C, p.(Gln1959Pro)) was identified in a female proband.
- The proband presented with a spectrum of congenital anomalies, including spina bifida occulta, segmental spinal dysgenesis, bilateral clubfeet, bicuspid aortic valve, and genital anomaly.
- This case expands the known phenotypic spectrum associated with ZFHX3.
Conclusions:
- The findings suggest a potential role for ZFHX3 in the etiology of NTDs and other congenital structural defects.
- Disruptions in Wnt/β-catenin, mTOR, and Hippo signaling pathways due to ZFHX3 alterations may contribute to these anomalies.
- Further research and case reports are necessary to establish causality and confirm ZFHX3's role in NTDs and congenital anomalies.

