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Development, External Validation, and Deployment of RFAN-ML: A Machine Learning Model to Estimate Renal Function
Jesse Persily1, Steven L Chang2, Chen Chen1
1Department of Urology, NYU Grossman School of Medicine, New York, NY.
JCO Clinical Cancer Informatics
|November 7, 2025
Summary
We developed a machine learning (ML) model, RFAN-ML, to predict kidney function after nephrectomy. This tool aids in personalized patient care and surgical planning for kidney tumor patients.
Area of Science:
- Nephrology
- Oncology
- Data Science
Background:
- Partial nephrectomy is preferred for small kidney tumors but carries perioperative risks.
- Accurate estimation of post-nephrectomy renal function is crucial for patient counseling and surgical decisions.
- Existing prediction models often lack external validation and user-friendly interfaces.
Purpose of the Study:
- To develop and externally validate a machine learning (ML) model, RFAN-ML, for estimating long-term renal function after nephrectomy.
- To provide a user-friendly tool for predicting renal function post-nephrectomy.
Main Methods:
- Utilized data from two academic medical institutions.
- Employed Boruta feature selection to identify key predictors: age, BMI, preoperative renal function, and nephrectomy type.
- Trained and evaluated six ML regression models, selecting the best performing one as RFAN-ML.
Main Results:
- RFAN-ML demonstrated superior or competitive performance compared to existing benchmarks.
- Achieved a root mean squared error (RMSE) of 16.6 (95% CI, 15.6 to 17.5).
- Performance was evaluated using R-squared and mean absolute error metrics.
Conclusions:
- RFAN-ML, a validated ML model, accurately predicts renal function post-nephrectomy.
- The model is available online, facilitating personalized patient counseling and surgical planning.
- RFAN-ML has the potential to enhance care and outcomes for kidney tumor patients.
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