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A Method for Screening and Validation of Resistant Mutations Against Kinase Inhibitors
Published on: December 7, 2014
Consensus Virtual Screening and Ex Vivo Evaluation of Novel JAK2/STAT1,3 Inhibitors
Mariana H García-Hernández1, Elena Jaime-Sánchez2, Abraham Cardenas-Juarez1
1Unidad de Investigación Biomédica de Zacatecas, Instituto Mexicano del Seguro Social (IMSS), Zacatecas 98000, México.
Abstract:
The Janus kinase (JAK)/signal transducer and activator of transcription (STAT) signaling pathway is a key therapeutic target for inflammatory and neoplastic diseases such as rheumatoid arthritis (RA) and certain types of cancer. Although several inhibitors have been approved for medical use, their associated adverse effects limit their therapeutic use. Therefore, it is essential to search for new, safer inhibitors. In this work, we applied computer-aided approaches consisting of consensus molecular docking and molecular dynamics using the JAK2 structure as a filter of 3330 drugs approved by the Food and Drug Administration (FDA) retrieved from the ZINC20 database. The best predicted virtual hits were evaluated in an ex vivo STAT1,3 phosphorylation functional model in human lymphocytes induced by IL-6 stimulation. The docking-based consensus-scoring strategy allowed the selection of pitavastatin (PIT), eltrombopag (ELT), flavoxate (FLA), and empagliflozin (EMP) as potential JAK2 inhibitors. Their stability was confirmed by running independent molecular dynamics simulations of 200 ns in triplicate, which showed comparable stability with baricitib (BAR) and showed that hydrogen bonding is involved in their binding with key amino acids of the ATP-binding site. In the ex vivo evaluations, pitavastatin (0.5004 μM), eltrombopag (0.2548 μM), flavoxate (0.1536 μM), and empagliflozin (0.2548 μM) affected the phosphorylation of downstream STAT1 and STAT3 signaling molecules, similarly to tofacitinib citrate (TOF) (1.2 nM ). These results encourage further in-depth preclinical experiments aimed at exploring the additional effects of the JAK2-STAT1/3 signaling pathway.
Insights
Researchers identified new potential JAK2 inhibitors, including pitavastatin, eltrombopag, flavoxate, and empagliflozin, by computationally screening FDA-approved drugs. These compounds show promise for treating inflammatory and neoplastic diseases with fewer side effects.
Area of Science:
- Pharmacology
- Computational Chemistry
- Immunology
Background:
- The Janus kinase (JAK)/signal transducer and activator of transcription (STAT) pathway is crucial for inflammatory and neoplastic diseases.
- Existing JAK inhibitors have adverse effects, necessitating the search for safer alternatives.
- JAK2 is a key target for therapeutic intervention in conditions like rheumatoid arthritis and cancer.
Purpose of the Study:
- To identify novel, safer inhibitors of the JAK2 signaling pathway.
- To screen FDA-approved drugs using computer-aided methods for potential JAK2 inhibitory activity.
- To validate computationally identified compounds through in vitro functional assays.
Main Methods:
- Consensus molecular docking and molecular dynamics simulations were employed to filter 3330 FDA-approved drugs against the JAK2 structure.
- Virtual hits were evaluated in an ex vivo functional model assessing STAT1,3 phosphorylation in human lymphocytes stimulated by IL-6.
- Stability of potential inhibitors was confirmed using 200 ns molecular dynamics simulations.
Main Results:
- Pitavastatin (PIT), eltrombopag (ELT), flavoxate (FLA), and empagliflozin (EMP) were identified as potential JAK2 inhibitors.
- Molecular dynamics simulations confirmed the stability of these compounds, showing comparable stability to baricitib (BAR).
- Ex vivo assays demonstrated that PIT, ELT, FLA, and EMP effectively inhibited STAT1 and STAT3 phosphorylation, similar to tofacitinib citrate (TOF).
Conclusions:
- Pitavastatin, eltrombopag, flavoxate, and empagliflozin are promising candidates for novel JAK2 inhibitors.
- These compounds exhibit favorable binding interactions within the JAK2 ATP-binding site.
- Further preclinical studies are warranted to explore the therapeutic potential of these identified JAK2 inhibitors.
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