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Updated: Jan 11, 2026

Fluorescence-Based Detection of FEN1 Nuclease Activity and Screening of Small-Molecule Inhibitors
Published on: June 27, 2025
In Situ-Generated Dual-Catalytic DNAzyme Walkers for High-Fidelity Electrochemiluminescence Detection of FEN1
Lu Yan1, Xiu-Li Tao1, Zhen Wang1
1MOE Key Laboratory of Luminescence Analysis and Molecular Sensing, College of Chemistry and Chemical Engineering, Institute of Developmental Biology and Regenerative Medicine, Southwest University, Chongqing 400715, P. R. China.
Abstract:
Flap endonuclease 1 (FEN1), an essential enzyme responsible for 5'-flap excision during DNA repair, serves as a key biomarker for disease diagnostics. However, current DNA probe-based methods for detecting FEN1 activity often suffer from nonspecific activation and signal leakage. Herein, we developed an innovative target-triggered in situ generation strategy that converted the linear DNA precursor into a dual-catalytic circular DNAzyme (DARE) walker, enabling high-fidelity electrochemiluminescence (ECL) detection of FEN1 activity. Unlike conventional preblocked DNA walkers that are susceptible to signal leakage due to unintended activation, the DARE walker is specifically generated from a linear DNA precursor via a target-triggered enzymatic cascade process. This in situ generation strategy minimizes background signals through degradation of unreacted precursors, thereby ensuring high analytical fidelity. Moreover, the DARE walker, characterized by a closed circular architecture with dual catalytic cores, exhibited a 35-fold greater resistance to exonucleases and an 8-fold enhanced stability in cell lysates compared to its linear counterparts, as well as a 6-fold higher cleavage efficiency relative to a single-core configuration. When incorporated into a DNA wireframe track-based ECL biosensor, the DARE walker demonstrated excellent sensitivity and selectivity with a limit of detection of 9.0 × 10-10 U μL-1, offering a robust tool for high-fidelity bioanalysis.
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