Cytopathologic and histopathologic characteristics of SMARCB1 deficient neoplasm and correlation with molecular and

Sandra Ixchel Sanchez1, Christina Adams1, Peter Illei1

  • 1Department of Pathology, The Johns Hopkins University School of Medicine and the Johns Hopkins Hospital, Baltimore, MD, United States.

Human Pathology
|November 12, 2025
PubMed
Abstract

Insights

SMARCB1 deficient neoplasms are aggressive tumors with variable morphology. Recognizing these tumors is crucial for effective management, especially with emerging targeted therapies like EZH2 inhibitors.

Area of Science:

  • Oncology
  • Pathology

Background:

  • SMARCB1 deficient neoplasms represent an aggressive and heterogeneous group of tumors with highly variable morphology.
  • Recent advancements in targeted therapy, such as EZH2 inhibitors like tazemetostat, have shown potential to improve patient survival.
  • Accurate identification of SMARCB1 deficient neoplasms is critical for timely and appropriate clinical management.

Purpose of the Study:

  • To characterize the clinicopathological features of SMARCB1 deficient neoplasms.
  • To evaluate the diagnostic utility of immunohistochemistry (IHC) for SMARCB1 (INI-1) expression in neoplasm diagnosis.
  • To correlate morphological and molecular findings in SMARCB1 deficient neoplasms.

Main Methods:

  • A retrospective search of the pathology archive over a 10-year period identified cases with SMARCB1 deficient neoplasm and aberrant SMARCB1 (INI-1) expression.
  • Cyto- and histomorphology, immunohistochemistry (IHC), and molecular findings were analyzed.
  • 54 cases with complete loss of SMARCB1 (INI-1) and 10 cases with partial loss were included.

Main Results:

  • The study identified 54 cases with complete SMARCB1 (INI-1) loss across various sample types (fluids, FNA, biopsies, resections) and age groups (14 days to 87 years).
  • Common anatomic sites included head and neck, CNS, lymph nodes, thorax/lung, and liver.
  • Morphological findings included poorly differentiated carcinoma, basaloid, rhabdoid, or epithelioid sarcomas, often with positive cytokeratin stains and complex genetic abnormalities.

Conclusions:

  • Ancillary testing for SMARCB1 (INI-1) is recommended for tumors exhibiting bizarre cytomorphology, particularly poorly differentiated or pleomorphic tumors.
  • Cytological recognition of SMARCB1 deficient neoplasms is essential for guiding appropriate patient management.
  • The findings underscore the importance of identifying SMARCB1 deficiency for therapeutic decisions.