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Updated: Jan 11, 2026

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Flow Cytometric Analysis of Biomarkers for Detecting Human Sperm Functional Defects
Published on: April 21, 2022
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Sperm rDNA Copy Number and Methylation Are Associated with Male-Factor Infertility.
Alina Michler1, Sarah Kießling1, Jana Durackova1,2
1Institute of Human Genetics, Julius Maximilians University, 97074 Würzburg, Germany.
International Journal of Molecular Sciences
|November 13, 2025
Summary
Sperm rDNA copy number (CN) varies significantly. Lower active rDNA CN in sperm is linked to abnormal semen parameters and reduced pregnancy rates, suggesting a role in male infertility.
Area of Science:
- Reproductive Biology
- Genetics
- Epigenetics
Background:
- Ribosomal DNA (rDNA) copy number (CN) in human sperm is highly variable.
- The activity of rDNA, indicated by promoter hypomethylation, is crucial for its function.
- Individual differences in rDNA CN and activity may impact male fertility.
Purpose of the Study:
- To quantify absolute and presumably active rDNA CN in sperm from individuals with normal versus abnormal semen parameters.
- To investigate the association between rDNA CN, promoter methylation, and fertility outcomes after in vitro fertilization (IVF)/intracytoplasmic sperm injection (ICSI).
- To explore the potential role of sperm rDNA CN in idiopathic male infertility.
Main Methods:
- Utilized droplet digital PCR and deep bisulfite sequencing to measure absolute and active rDNA CN.
- Analyzed sperm samples from 190 individuals, categorized by semen quality and IVF/ICSI pregnancy outcomes.
- Assessed promoter methylation levels in relation to rDNA CN and semen parameters.
Main Results:
- Abnormal semen parameter (ASP) samples showed significantly lower presumably active rDNA CN (104 ± 31) compared to normal samples (NSP) (115 ± 31).
- Increased promoter methylation was observed in ASPs (13.9%) versus NSPs (12.1%).
- Sperm samples not leading to pregnancy had lower absolute (225 ± 51) and active rDNA CN (103 ± 30) than those resulting in pregnancy (249 ± 62 and 115 ± 31, respectively).
Conclusions:
- Sperm rDNA CN, both absolute and active, may be a key factor influencing idiopathic male infertility.
- A higher active rDNA CN in normozoospermic males correlates with successful pregnancy outcomes.
- Approximately 60 active sperm rDNA copies appear sufficient for establishing pregnancy, highlighting their importance in reproductive success.
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