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LiteBoost: a lightweight and explainable boosting model for predicting polymer density from SMILES data
Tuan Nguyen-Sy1,2, Hieu Do-Trung3, Nam Nguyen-Hoang3
1Laboratory for Computational Mechanics, Institute for Computational Science and Artificial Intelligence, Van Lang University, Ho Chi Minh City, Vietnam. tuan.nguyensy@vlu.edu.vn.
Abstract:
Accurately predicting polymer density from SMILES strings remains challenging due to the small size, high noise, and chemically diversity of typical datasets. We introduce LiteBoost, a deliberately minimalist gradient boosting model that employs shallow, three-level symmetric trees and exposes only two tunable hyperparameters (n_estimators and learning_rate). Using a curated dataset of 613 polymers, we benchmark LiteBoost against ExtraTrees, XGBoost, LightGBM, and CatBoost, optimizing each with 100-1000 Optuna trials and evaluating performance across seven complementary metrics: R2, RMSE, MAE, median AE, MAPE, maximum error, and explained variance. LiteBoost achieves a MAE of 0.031 g/cm3, RMSE of 0.062 g/cm3, R2 of 0.81, and MAPE of 3.03%, all within 2-3% of the best-in-class CatBoost and XGBoost scores and well within the bounds of experimental uncertainty. Crucially, it does so with orders-of-magnitude fewer hyperparameters. These results demonstrates that a streamlined boosting model can rival heavyweight ensembles in accuracy while dramatically reducing tuning effort, computational cost, and interpretability barriers. LiteBoost is thus a practical first-line surrogate model for high-throughput polymer screening and inverse-design workflows where speed, robustness, and transparency are as critical as raw predictive power.
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