Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Genome Annotation and Assembly03:36

Genome Annotation and Assembly

20.5K
The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
20.5K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Rare germline variants contribute to glioma predisposition: Whole-genome analysis of a regional cohort of glioma patients.

Neuro-oncology advances·2026
Same author

Spinach genomes reveal migration history and candidate genes for important crop traits.

NAR genomics and bioinformatics·2024
Same author

Author Correction: Genomic distances reveal relationships of wild and cultivated beets.

Nature communications·2024
Same author

Genomic basis of seed colour in quinoa inferred from variant patterns using extreme gradient boosting.

Plant biotechnology journal·2024
Same author

Using evolutionary constraint to define novel candidate driver genes in medulloblastoma.

Proceedings of the National Academy of Sciences of the United States of America·2023
Same author

Genomic distances reveal relationships of wild and cultivated beets.

Nature communications·2022

Related Experiment Video

Updated: Jan 11, 2026

Metagenomic Analysis of Silage
08:43

Metagenomic Analysis of Silage

Published on: January 13, 2017

19.0K

Sugar beet long-read reference assembly of genotype KWS2320.

Juliane C Dohm1, Thomas Holzweber1, Raphaela A Pensch1

  • 1Institute of Computational Biology, Department of Biotechnology and Food Science, BOKU University, Muthgasse 18, Vienna 1190, Austria.

NAR Genomics and Bioinformatics
|November 17, 2025
PubMed
Summary

Researchers present RefBeet-3.0, a high-quality genome sequence for sugar beet (Beta vulgaris) genotype KWS2320. This comprehensive resource includes an evidence-based gene set, BeetSet-3, vital for future sugar beet studies and breeding.

More Related Videos

Transposon-insertion Sequencing as a Tool to Elucidate Bacterial Colonization Factors in a Burkholderia gladioli Symbiont of Lagria villosa Beetles
09:55

Transposon-insertion Sequencing as a Tool to Elucidate Bacterial Colonization Factors in a Burkholderia gladioli Symbiont of Lagria villosa Beetles

Published on: August 12, 2021

4.2K
Development of Targeting Induced Local Lesions IN Genomes TILLING Populations in Small Grain Crops by Ethyl Methanesulfonate Mutagenesis
08:36

Development of Targeting Induced Local Lesions IN Genomes TILLING Populations in Small Grain Crops by Ethyl Methanesulfonate Mutagenesis

Published on: July 16, 2019

12.2K

Related Experiment Videos

Last Updated: Jan 11, 2026

Metagenomic Analysis of Silage
08:43

Metagenomic Analysis of Silage

Published on: January 13, 2017

19.0K
Transposon-insertion Sequencing as a Tool to Elucidate Bacterial Colonization Factors in a Burkholderia gladioli Symbiont of Lagria villosa Beetles
09:55

Transposon-insertion Sequencing as a Tool to Elucidate Bacterial Colonization Factors in a Burkholderia gladioli Symbiont of Lagria villosa Beetles

Published on: August 12, 2021

4.2K
Development of Targeting Induced Local Lesions IN Genomes TILLING Populations in Small Grain Crops by Ethyl Methanesulfonate Mutagenesis
08:36

Development of Targeting Induced Local Lesions IN Genomes TILLING Populations in Small Grain Crops by Ethyl Methanesulfonate Mutagenesis

Published on: July 16, 2019

12.2K

Area of Science:

  • Plant genomics
  • Crop science
  • Molecular biology

Background:

  • Sugar beet (Beta vulgaris) is a crucial crop for sugar production, especially in Europe.
  • The KWS2320 genotype is a widely used reference in sugar beet research.
  • Existing genomic resources for KWS2320 have limitations.

Purpose of the Study:

  • To generate a high-quality genome sequence assembly for sugar beet genotype KWS2320.
  • To create a comprehensive, evidence-based gene set for this genotype.
  • To provide a robust genomic resource for future research and breeding.

Main Methods:

  • Utilized long-read sequencing technologies (Pacific Biosciences, Oxford Nanopore).
  • Integrated data with Bionano optical maps and additional genomic resources.
  • Developed an evidence-based gene set using billions of mRNA-seq reads.

Main Results:

  • The RefBeet-3.0 assembly covers 648 Mb in nine pseudochromosomes with an N50 of 61.5 Mb.
  • The BeetSet-3 gene set comprises 28,271 genes, with 25,824 functionally annotated.
  • RefBeet-3.0 demonstrates high completeness and sequence accuracy compared to previous assemblies.

Conclusions:

  • RefBeet-3.0 and BeetSet-3 represent significant advancements in sugar beet genomics.
  • These resources will facilitate future studies in sugar beet genetics and breeding.
  • The high-quality genome sequence and gene set will accelerate research and crop improvement.