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Area of Science:

  • Agricultural Science
  • Plant Breeding
  • Genomics

Background:

  • Perennial crops face environmental challenges threatening productivity.
  • Slow breeding cycles in perennials hinder adaptation to climate change.
  • Annual crops utilize predictive breeding with multi-omics for accelerated genetic gains.

Purpose of the Study:

  • Assess current predictive breeding in perennials.
  • Compare with multi-omics frameworks in annual crops.
  • Outline considerations for implementing multi-omics in perennial breeding.

Main Methods:

  • Review of single-omic and emerging omics resources in perennials.
  • Comparison with established multi-omics prediction frameworks in annual crops.
  • Analysis of challenges and strategies for multi-omics integration.

Main Results:

  • Multi-omics approaches capture system features of regulatory networks.
  • Established multi-omics frameworks in annual crops enhance predictive ability.
  • Key considerations for perennials include end-to-end systems and modeling complex interactions.

Conclusions:

  • Multi-omics predictive breeding shows promise for rapid genetic improvement in perennials.
  • Addressing challenges like data dimensionality and GxE interactions is crucial.
  • Cross-institutional collaboration and simulation tools can optimize multi-omics integration.