NUDT21-mediated Alternative Polyadenylation of CDK19 Reprograms Cholesterol Biosynthesis to Drive Colorectal Cancer Progression
Yeping Yu1, Jixin Ma1, Minwei Zhou1
1Department of General Surgery, Huashan Hospital, Fudan University, Shanghai, 200040, China.
Abstract:
Alternative polyadenylation (APA) is critical for shaping transcriptome diversity by generating mRNA isoforms that differ in the length of their 3'untranslated region (3'UTR). APA dysregulation, a defined feature of tumorigenesis, remains poorly understood in colorectal cancer (CRC). Here, CRISPR/Cas9 screening identifies APA regulator NUDT21 as a key driver of CRC progression. NUDT21 is overexpressed in CRC tumors and correlates with poor prognosis in CRC patients. Genetic ablation of NUDT21 impairs CRC cell proliferation and triggers CD8+ T cell anti-tumor response through disrupting cholesterol biosynthesis, leading to delayed tumor progression in syngeneic mouse models. Mechanistically, NUDT21 promotes the generation of cyclin-dependent kinase 19 (CDK19) mRNA isoforms with long 3'UTR by directing usage of distal polyadenylation sites. The long 3'UTR facilitates the export of CDK19 transcripts to the cytoplasm and supports their efficient translation, with no impact on their stability. Truncation of the long 3'UTR of Cdk19 recapitulates cholesterol biosynthesis and proliferative impairments, as well as the enhanced anti-tumor CD8+ T cell activity observed upon NUDT21 depletion, whereas CDK19 overexpression rescues these phenotypes. The findings establish the NUDT21-CDK19 axis as a central hub integrating APA manner, cholesterol metabolic reprogramming, and immune evasion in CRC, unveiling potential therapeutic opportunities.
Insights
Alternative polyadenylation (APA) regulator NUDT21 drives colorectal cancer (CRC) by altering cholesterol metabolism and immune evasion. Depleting NUDT21 impairs tumor growth and enhances anti-tumor T cell responses in CRC.
Area of Science:
- Molecular Biology
- Cancer Research
- Immunology
Background:
- Alternative polyadenylation (APA) generates mRNA variants impacting gene expression.
- APA dysregulation is implicated in cancer, but its role in colorectal cancer (CRC) is unclear.
- NUDT21 is identified as a potential regulator of APA in CRC.
Purpose of the Study:
- To investigate the role of NUDT21 in colorectal cancer (CRC) progression.
- To elucidate the molecular mechanisms by which NUDT21 influences CRC.
- To explore the therapeutic potential of targeting the NUDT21-CDK19 axis in CRC.
Main Methods:
- CRISPR/Cas9 screening to identify APA regulators in CRC.
- NUDT21 expression analysis in CRC tumors and correlation with patient prognosis.
- Genetic ablation of NUDT21 in CRC cells and mouse models.
- Analysis of NUDT21's impact on cholesterol biosynthesis and CD8+ T cell response.
- Investigation of NUDT21's role in regulating CDK19 mRNA polyadenylation and translation.
Main Results:
- NUDT21 is overexpressed in CRC and associated with poor prognosis.
- NUDT21 depletion inhibits CRC cell proliferation and enhances CD8+ T cell anti-tumor immunity.
- NUDT21 promotes long 3'UTR isoforms of CDK19, facilitating its translation.
- CDK19's 3'UTR length is crucial for cholesterol biosynthesis and proliferation.
- Restoring CDK19 expression rescues phenotypes observed upon NUDT21 depletion.
Conclusions:
- The NUDT21-CDK19 axis is a key regulator of cholesterol metabolism and immune evasion in CRC.
- NUDT21 drives CRC progression by modulating APA of CDK19.
- Targeting NUDT21 or CDK19 may offer novel therapeutic strategies for CRC.
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