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Evaluation of Colorectal Cancer Risk and Prevalence by Stool DNA Integrity Detection
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A Novel Blood-Based Test for Colorectal Cancer Detection Using Cell-Free DNA Fragmentomics.

Seung Wook Hong1, Juntae Park2, Junnam Lee2

  • 1Department of Gastroenterology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea.

The American Journal of Gastroenterology
|November 19, 2025
PubMed
Summary
This summary is machine-generated.

A new blood test using cell-free DNA (cfDNA) fragmentomics shows high accuracy for colorectal cancer (CRC) screening. This noninvasive test also demonstrated acceptable performance for detecting advanced adenomas (AA).

Keywords:
cell-free DNAcolorectal cancerscreening

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Area of Science:

  • Oncology
  • Genomics
  • Biomarkers

Background:

  • Fragmentomic analysis of cell-free DNA (cfDNA) is a promising noninvasive approach for cancer screening.
  • Developing accurate blood tests for colorectal cancer (CRC) and advanced adenoma (AA) is crucial for early detection and improved patient outcomes.

Purpose of the Study:

  • To develop and evaluate a novel cfDNA-based blood test for diagnosing colorectal cancer (CRC) and advanced adenoma (AA).
  • To assess the diagnostic performance of the cfDNA test in a prospective case-control study.

Main Methods:

  • A prospective case-control study enrolled 1,677 participants, including those with normal colonoscopy, CRC, and AA.
  • Whole-genome sequencing of cfDNA was used to extract fragmentomic features.
  • A diagnostic model was developed using the Residual Enrichment From Independent Normal Ensemble method and validated in a separate cohort.

Main Results:

  • The cfDNA test achieved 90.4% sensitivity for CRC and 58.3% for AA in the validation cohort.
  • Overall accuracy for advanced neoplasia was 84.8%, with 94.7% specificity in normal individuals.
  • High diagnostic accuracy was observed across all CRC stages and consistent performance across subgroups.

Conclusions:

  • The developed cfDNA-based blood test shows high diagnostic accuracy for CRC and acceptable performance for AA.
  • This noninvasive test holds potential as an effective screening tool for colorectal cancer, with consistent performance across various clinical subgroups.