Exonic Variation in HLA-C, CFB, and TAP2 Associated With Increased Risk for Comorbid Crohn's Disease and Psoriasis
Vikram R Shaw1, Jinyoung Byun2, Catherine Zhu1
1Institute for Clinical and Translational Research, Baylor College of Medicine, Houston, Texas, USA.
International Journal of Dermatology
|November 19, 2025
Summary
Genetic variants in HLA-C, CFB, and TAP2 are linked to the rare comorbidity of psoriasis (PS) and Crohn
Area of Science:
- Genetics
- Immunology
- Dermatology
- Gastroenterology
Background:
- Psoriasis (PS) and Crohn's disease (CD) are chronic immune-mediated inflammatory conditions with shared underlying mechanisms.
- While rare, a significant association exists between PS and CD, suggesting common genetic influences.
- Understanding the genetic basis of this comorbidity is crucial for personalized medicine.
Purpose of the Study:
- To identify novel genetic variations associated with the comorbidity of psoriasis and Crohn's disease.
- To compare the genetic architecture of comorbid PS/CD with PS or CD alone.
- To validate findings in independent patient cohorts.
Main Methods:
- Focused exome-wide association study (ExWAS) in UK Biobank (UKB) participants.
- Case-control design comparing comorbid PS/CD cases to healthy controls and PS/CD alone cases.
- Validation analysis in the All of Us (AoU) Research Program.
Main Results:
- The genetic profile of comorbid PS/CD resembles that of PS alone.
- Three protein-coding variants in HLA-C, CFB, and TAP2 were significantly associated with comorbidity.
- Combined carriage of these three risk variants showed a strong association with comorbid disease in both UKB and AoU cohorts.
Conclusions:
- Novel exonic, protein-coding genetic variations are associated with PS and CD comorbidity.
- A trigenic risk score involving variants in HLA-C, CFB, and TAP2 may predict comorbid disease.
- These genetic findings could serve as prognostic biomarkers and inform personalized treatment strategies.
Related Concept Videos
Genome-wide Association Studies-GWAS
15.2K
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...
15.2K
Inflammatory Bowel Disease II: Crohn's Disease
932
Introduction
Inflammatory bowel disease, commonly known as IBD, refers to a collection of disorders that lead to persistent inflammation of the gastrointestinal tract. The two types of IBD are ulcerative colitis, which impacts the colon, and Crohn's disease, which can involve any part of the gastrointestinal segment.
Crohn's disease
Crohn's disease is a chronic, systemic inflammatory bowel disease (IBD) that predominantly affects the gastrointestinal tract. It is marked by...
Inflammatory bowel disease, commonly known as IBD, refers to a collection of disorders that lead to persistent inflammation of the gastrointestinal tract. The two types of IBD are ulcerative colitis, which impacts the colon, and Crohn's disease, which can involve any part of the gastrointestinal segment.
Crohn's disease
Crohn's disease is a chronic, systemic inflammatory bowel disease (IBD) that predominantly affects the gastrointestinal tract. It is marked by...
932
Exon Recombination
4.1K
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon...
Exon shuffling follows “splice frame rules.” Each exon...
4.1K
T Cell Types and Functions
2.1K
When T cells with CD4 markers are activated, they give rise to two types of effector cells: helper T cells and regulatory T cells. Meanwhile, T cells with CD8 markers differentiate into effector cytotoxic T cells. The differentiation of CD4 T cells into helper T cell subsets, such as Th1, Th2, and Th17 cells, is dependent on the antigen type, antigen-presenting cell, and regulatory cytokines.
Th1 cells stimulate dendritic cells to express necessary co-stimulatory molecules on their surfaces for...
Th1 cells stimulate dendritic cells to express necessary co-stimulatory molecules on their surfaces for...
2.1K
Comparing Copy Number Variations and SNPs
18.5K
Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
18.5K
Drugs for Treatment of Crohn's Disease in IBD Using Biologic Agents: Anti-TNF
465
Tumor Necrosis Factor (TNF), a proinflammatory cytokine, contributes significantly to the inflammation seen in Crohn's disease. It exists as soluble TNF and membrane-bound TNF, with actions mediated through TNF receptors (TNFR). TNFR activation leads to the release of proinflammatory cytokines, T-cell activation, collagen production, and leukocyte migration, all contributing to inflammation in Crohn's disease. Anti-TNF monoclonal antibodies, namely infliximab (Remicade), adalimumab...
465


