Ribonuclease RNase Z is an evolutionarily conserved deAMPylase
Meghomukta Mukherjee1, Alex Pon1, Timea Goldberg1
1Department of Physiology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Abstract:
Protein AMPylation is a highly conserved posttranslational modification in which adenosine monophosphate (AMP) is covalently attached to protein substrates. Our studies revealed that the mitochondrial AMPylase, Selenoprotein O (SelO), regulates cellular metabolism and oxidative stress response through AMPylation of key metabolic enzymes. Remarkably, SelO-mediated AMPylation is conserved in bacteria and humans, yet the enzyme that removes the AMP from modified proteins remains unknown. We show that the ribonuclease, RNase Z, is both necessary and sufficient to catalyze deAMPylation of AMPylated substrates. These results establish RNase Z as a moonlighting enzyme with previously unrecognized functional roles beyond tRNA processing, expanding our understanding of its biological significance. Furthermore, identification of an evolutionarily conserved deAMPylase highlights the importance of reversible AMPylation as a biological regulatory mechanism, akin to well-studied post translational modifications such as protein phosphorylation.
Insights
Researchers discovered that RNase Z removes adenosine monophosphate (AMP) from proteins, identifying it as a key enzyme in reversible protein AMPylation. This finding reveals a new role for RNase Z beyond its known function in tRNA processing.
Area of Science:
- Biochemistry
- Molecular Biology
- Cellular Metabolism
Background:
- Protein AMPylation is a conserved posttranslational modification where adenosine monophosphate (AMP) attaches to proteins.
- Mitochondrial AMPylase, Selenoprotein O (SelO), regulates metabolism and oxidative stress via protein AMPylation.
- The enzyme responsible for removing AMP from modified proteins was previously unknown.
Purpose of the Study:
- To identify the enzyme that catalyzes deAMPylation of AMPylated protein substrates.
- To elucidate the role of this enzyme in the reversible AMPylation pathway.
- To understand the broader biological significance of RNase Z.
Main Methods:
- Biochemical assays to test deAMPylation activity.
- Enzyme kinetics studies.
- In vitro and in vivo functional assays.
Main Results:
- Ribonuclease Z (RNase Z) was identified as the enzyme responsible for deAMPylation.
- RNase Z is both necessary and sufficient to remove AMP from AMPylated substrates.
- This establishes RNase Z as a moonlighting enzyme with a novel function beyond tRNA processing.
Conclusions:
- RNase Z catalyzes deAMPylation, revealing its role in reversible protein AMPylation.
- The discovery highlights the importance of AMPylation as a regulatory mechanism, similar to phosphorylation.
- RNase Z possesses a previously unrecognized biological function, expanding its known significance.
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