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Updated: May 2, 2026

High-throughput DNA Extraction and Genotyping of 3dpf Zebrafish Larvae by Fin Clipping
Published on: June 29, 2018
Position-specific methyl substitution on benzo[a]pyrene drives AHR-dependent fin duplication in zebrafish
Mackenzie L Morshead1, Lisa Truong1, Robyn L Tanguay1
1Department of Environmental and Molecular Toxicology, Oregon State University, Corvallis, OR 97333, United States.
Abstract:
Polycyclic aromatic hydrocarbons (PAHs) are a contaminant class characterized by fused aromatic rings, formed through the incomplete combustion of organic materials and petrogenic sources. Despite the abundance and toxicity of alkyl-substituted PAHs, most research and regulation focus on unsubstituted parent PAHs. Alkyl substitution of Benzo[a]pyrene (BaP), one of the most well-studied parent PAHs, drastically alters its bioactivity in zebrafish. In larval zebrafish exposed from 6 h post-fertilization (hpf), BaP caused behavioral effects but no morphological effects up to 50 µM at 120 hpf. In contrast, 8-methylbenzo[a]pyrene caused a distinct fin duplication phenotype by 0.26 µM and additional morphological effects by 1 µM. Alkyl substitution in different positions (7-, 6-, 9-, and 10-MBaP) did not elicit morphological effects at similar concentrations. This study characterized the morphological effects of 8-MBaP in zebrafish and investigated its mechanism(s) of action. Using knock-out lines, we demonstrated that 8-MBaP toxicity is Ahr2 dependent and that Cyp1a served a protective role. To identify underlying transcriptomic changes, embryos were exposed to 3 concentrations of BaP, 6-MBaP, and 8-MBaP. Whole embryos/larvae were collected at 48 and 72 hpf, which was before and during phenotype onset, respectively. Collecting RNA and morphological effects across concentration, time, and chemicals facilitated the identification of concentration-dependent transcriptional responses linked to the downstream morphological phenotypes unique to BaP methylation at the eighth position. This study improves environmental and human health hazard assessment by identifying critical structural features and mechanisms of action contributing to the toxicity of PAH mixtures in the environment.
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