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Advancing genotype-phenotype analysis through 3D facial morphometry: insights from Cri-du-Chat syndrome
Michiel Vanneste1,2, Harold Matthews1,2, Yoeri Sleyp1
1Department of Human Genetics, Katholieke Universiteit Leuven, Leuven, Belgium.
Journal of Medical Genetics
|November 20, 2025
Summary
Three-dimensional (3D) morphometry precisely quantifies facial changes in Cri-du-Chat syndrome (CdCS). This advanced technique aids in diagnosing genetic disorders and understanding genotype-phenotype correlations.
Area of Science:
- Genetics
- Medical Imaging
- Anthropology
Background:
- Facial dysmorphism is a key indicator in numerous monogenic disorders, posing diagnostic challenges.
- Accurate assessment of complex facial shape variations in syndromes is crucial for clinical practice.
Purpose of the Study:
- To introduce and validate three-dimensional (3D) morphometric methods for analyzing facial dysmorphism.
- To utilize Cri-du-Chat syndrome (CdCS) as a model for demonstrating the utility of 3D facial analysis.
Main Methods:
- Analysis of 3D facial images from 24 CdCS participants, 4540 controls, and 5 individuals with 5p15.33-15.32 deletions.
- Application of age- and sex-correction methods to account for normal facial variation.
- Quantification of phenotypic variation and exploration of genotype-phenotype correlations in CdCS.
Main Results:
- Identified age-related changes in CdCS facial features.
- Demonstrated consistent directional differences in facial shape between CdCS patients and controls.
- Delineated critical regions for facial dysmorphism on chromosome 5p by distinguishing CdCS from 5p15.33-15.32 deletion phenotypes.
Conclusions:
- 3D facial morphometry offers a valuable complement to standard clinical assessments of facial dysmorphism.
- The study provides insights into the genetic underpinnings of facial shape in CdCS.
- 3D morphometric techniques show significant potential for improving clinical diagnostics, variant interpretation, and syndrome classification.

