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Related Experiment Video

Updated: Jan 10, 2026

Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies

Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies

Published on: August 20, 2021

GlobDB: a comprehensive species-dereplicated microbial genome resource.

Daan R Speth¹, Nick Pullen¹, Samuel T N Aroney²

¹Centre for Microbiology and Environmental Systems Science, University of Vienna, 1030 Vienna, Austria.

Bioinformatics Advances

|November 21, 2025

Summary

GlobDB consolidates 14 genomic catalogs, significantly expanding microbial species genome representation. This comprehensive database offers consistent taxonomy and annotations for enhanced research accessibility.

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Last Updated: Jan 10, 2026

Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies

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Published on: August 20, 2021

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Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Published on: December 7, 2021

Area of Science:

Microbiology
Bioinformatics
Genomics

Background:

Numerous microbial genomes are stored outside standard INSDC databases, hindering comprehensive analysis.
A need exists for a unified resource to access and analyze microbial genomic data.

Purpose of the Study:

To create a centralized, comprehensive database of microbial genomes.
To improve the accessibility and usability of microbial genomic data for research.

Main Methods:

Aggregation of 14 independent genomic catalogues.
Species-dereplication of microbial genomes.
Standardization of taxonomy and annotations across datasets.

Main Results:

The GlobDB database was developed, integrating 14 genomic catalogues.
GlobDB provides species-dereplicated microbial genomes with consistent taxonomy and annotations.
The number of microbial species represented in GlobDB more than doubles that of existing standard databases.

Conclusions:

GlobDB offers a significantly expanded and unified resource for microbial genomics.
The database enhances research by providing consistent, accessible genomic data.
GlobDB is publicly available at https://globdb.org/.