Related Experiment Video
Updated: Jan 10, 2026

Evaluation of Substrate Ubiquitylation by E3 Ubiquitin-ligase in Mammalian Cell Lysates
Published on: May 10, 2022
UFL1-mediated UFMylation antagonizes IFT88 ubiquitination and degradation to maintain ciliary homeostasis
Runa Wang1, Guizhi Guo1, Renshuai Zhang1
1Center for Cell Structure and Function, Shandong Provincial Key Laboratory of Animal Resistance Biology, College of Life Sciences, Shandong Normal University, Jinan, China.
Abstract:
UFMylation, a post-translational modification involving the covalent conjugation of ubiquitin-fold modifier 1 (UFM1) to target proteins, has been implicated in a wide spectrum of human diseases. However, the underlying molecular mechanisms are poorly understood. Herein, we demonstrate that UFM1-specific ligase 1 (UFL1), the sole ligase for UFMylation, is indispensable for ciliary homeostasis. Genetic ablation of UFL1 in mice results in severe defects in ciliary structure and function in multiple tissues. Mechanistic investigation reveals that intraflagellar transport 88 (IFT88), a protein essential for ciliary assembly and maintenance, undergoes UFMylation at lysine 572. The UFMylation antagonizes IFT88 ubiquitination by Praja ring finger ubiquitin ligase 2 (PJA2), thereby preventing its proteasomal degradation. The lysine 572-to-arginine mutant of IFT88 exhibits increased stability and efficacy in rescuing ciliary defects induced by UFL1 depletion. Our findings identify a critical role for IFT88 UFMylation in ciliary homeostasis and offer novel insights into human ciliopathies.
Insights
UFMylation, a protein modification, is vital for ciliary homeostasis. The UFM1 ligase 1 (UFL1) enzyme regulates intraflagellar transport 88 (IFT88) stability, preventing degradation and maintaining ciliary function in various tissues.
Area of Science:
- Biochemistry
- Cell Biology
- Molecular Biology
Background:
- UFMylation, a post-translational modification, is linked to human diseases, but its mechanisms remain unclear.
- UFM1-specific ligase 1 (UFL1) is the primary enzyme responsible for catalyzing UFMylation.
- Cilia play crucial roles in cellular function and are implicated in various human disorders.
Purpose of the Study:
- To investigate the role of UFL1 in ciliary homeostasis.
- To elucidate the molecular mechanisms by which UFMylation affects ciliary function.
- To identify novel therapeutic targets for ciliopathies.
Main Methods:
- Genetic ablation of UFL1 in mice.
- Analysis of ciliary structure and function in various tissues.
- Biochemical assays to study protein-protein interactions and post-translational modifications.
Main Results:
- UFL1 is essential for maintaining ciliary structure and function in mice.
- UFMylation of intraflagellar transport 88 (IFT88) at lysine 572 prevents its ubiquitination and proteasomal degradation by PJA2.
- A mutant IFT88 (K572R) shows enhanced stability and rescues UFL1 depletion-induced ciliary defects.
Conclusions:
- UFMylation of IFT88 is a critical regulatory mechanism for ciliary homeostasis.
- This study reveals a novel role for UFMylation in preventing IFT88 degradation, impacting ciliary function.
- The findings provide new insights into the molecular basis of ciliopathies and potential therapeutic strategies.
Related Concept Videos
Regulated Protein Degradation
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Receptor Downregulation in MVBs
The EGFR can initiate signaling pathways that lead to cell proliferation, migration, and differentiation. Overexpression of EGFR stimulates cells to proliferate. Excessive EGFR...
The Unfolded Protein Response
The Proteasome
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
The Proteasome
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
Export of Misfolded Proteins out of the ER

