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Triplet longitudinal masked autoencoder for predicting individualized functional connectome development during

Weiran Xia1, Xin Zhang2, Dan Hu3

  • 1Department of Radiology and Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Lampe Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill and North Carolina State University, Chapel Hill, NC, USA; School of Future Technology, South China University of Technology, Guangzhou, Guangdong, China.

Medical Image Analysis
|November 22, 2025
PubMed
Summary

Predicting infant brain functional connectivity (FC) development is challenging due to missing data. Our novel Triplet Longitudinal Masked Autoencoder (TL-MAE) method accurately forecasts dynamic FC trajectories, improving understanding of neurodevelopment.

Keywords:
Functional connectivityInfantLongitudinal trajectory prediction

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Area of Science:

  • Neuroscience
  • Developmental Neuroscience
  • Medical Imaging

Background:

  • Resting-state functional MRI (rs-fMRI) is key for infant brain functional connectivity (FC) studies.
  • Predicting infant FC trajectories from incomplete longitudinal data is vital for understanding brain development and identifying disorders.
  • Current deep learning methods struggle with temporal inconsistencies and missing data in infant FC prediction.

Purpose of the Study:

  • To develop a novel method for accurately predicting the full dynamic developmental trajectory of infant brain functional connectivity.
  • To address challenges posed by scarce longitudinal data and irregular missing scans in infant neuroimaging.
  • To improve the temporal consistency and accuracy of FC predictions during infancy.

Main Methods:

  • Proposed a Triplet Longitudinal Masked Autoencoder (TL-MAE) for dynamic infant FC trajectory prediction.
  • Implemented a longitudinally consistent prediction strategy for robust FC generation.
  • Utilized an FC-specific Masked Autoencoder pre-trained on large datasets.
  • Developed a dual triplet network with an identity conditional module for individualized age-based predictions.

Main Results:

  • The TL-MAE method demonstrated more accurate and temporally consistent predictions of FC developmental trajectories.
  • The model successfully captured individualized features in infant brain development.
  • Experimental results on 696 longitudinal infant fMRI scans validated the method's superiority over state-of-the-art techniques.

Conclusions:

  • The TL-MAE offers a significant advancement in predicting dynamic infant brain functional connectivity.
  • This method enhances understanding of normal and abnormal neurodevelopmental trajectories.
  • TL-MAE provides a robust tool for individualized prediction of infant brain development from rs-fMRI data.