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Updated: Jan 10, 2026

A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts
Published on: September 20, 2018
Scalable Clinical Annotation with Location Evidence (SCALE)
Joeran S Bosma1, Luc Builtjes2, Anindo Saha3
1Diagnostic Image Analysis Group, Department of Medical Imaging, Radboud University Medical Center, Nijmegen, The Netherlands; Department of Health & Information Technology, Ziekenhuisgroep Twente, Almelo, The Netherlands; Department of Radiology, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Abstract:
Deep learning can mitigate the global radiologist shortage but its development requires large-scale annotated datasets. This study introduces SCALE (Scalable Clinical Annotation with Location Evidence), a fully automated method for generating voxel-level annotations. It uses location priors that are automatically extracted from medical reports, tracked biopsy coordinates, or provided anatomical sectors. We annotated a large-scale dataset comprising 17 896 cases from 16 562 patients across 24 hospitals in 10 countries and 2 continents, using both SCALE and a count-based weakly semisupervised learning (CWSSL) method. An optimized algorithm was developed and trained on these datasets. Evaluation with 1561 cases from 1561 patients across 19 hospitals in 3 countries and 1 continent showed the superiority of the model trained on the dataset with SCALE annotations, achieving a case-level area under the receiver operating characteristic curve of 0.856. This is +0.012 compared to supervised learning (p=0.02), +0.007 compared to training with CWSSL (p=0.12), and +0.006 compared to the Prostate Imaging: Cancer AI (PI-CAI) Ensemble AI System. These results demonstrate that automated, location-guided annotation enables scalable development of AI for clinically significant prostate cancer detection on MRI, surpassing previous methods, and paving the way for broader clinical deployment.
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