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Updated: Jan 10, 2026

Conducting Multiple Imaging Modes with One Fluorescence Microscope
Published on: October 28, 2018
A correlative quantitative phase contrast and fluorescence super-resolution microscope for imaging molecules in their
Yujin Bao1,2, Zach Marin1,3, Xiongchao Chen3
1Department of Cell Biology, Yale School of Medicine, New Haven, CT, USA.
This study introduces a new microscopy platform combining quantitative phase contrast and super-resolution fluorescence imaging. This allows for detailed cellular context visualization and deep learning-based organelle identification without fluorescence labeling.
Area of Science:
- Biophysics
- Cell Biology
- Microscopy
Background:
- Fluorescence microscopy excels at visualizing labeled molecules but lacks cellular context.
- Quantitative phase contrast microscopy (QPC) offers complementary structural information.
- Integrating QPC with super-resolution fluorescence microscopy can overcome these limitations.
Purpose of the Study:
- To develop a combined microscopy platform integrating QPC and super-resolution fluorescence.
- To achieve high-sensitivity detection and 3D super-resolution imaging within cellular environments.
- To explore deep-learning-based digital staining for label-free organelle identification.
Main Methods:
- Correlative orientation-independent differential interference contrast (OI-DIC) microscopy was combined with single-molecule super-resolution fluorescence microscopy.
- Demonstrated detection sensitivity of 0.05 nm optical path difference.
- Employed deep learning for digital staining of cellular structures from OI-DIC data.
Main Results:
- Achieved 3D super-resolution fluorescence imaging within the cellular context.
- Demonstrated detection sensitivity sufficient for single microtubules.
- Successfully identified nuclei, mitochondria, and lipid droplets using deep-learning enabled digital staining.
- Showcased potential for long-term live-cell imaging of organelles without fluorescence.
Conclusions:
- The developed platform integrates QPC and super-resolution fluorescence for comprehensive cellular imaging.
- Deep learning enables label-free organelle identification and long-term live-cell imaging.
- OI-DIC is easily integrated into existing fluorescence microscopes, making it widely adoptable.
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