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Updated: Jan 10, 2026

Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Published on: June 27, 2020
Shifted assembly and function of mSWI/SNF family subcomplexes underlie targetable dependencies in dedifferentiated
Jessica D St Laurent1,2,3, Grace D Xu1,2, Alexander W Ying1,2
1Department of Pediatric Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA, USA 02215.
Abstract:
The mammalian SWI/SNF (mSWI/SNF) family of chromatin remodelers govern cell type-specific chromatin accessibility and gene expression and assemble as three distinct complexes: canonical BAF (cBAF), Polybromo-associated BAF (PBAF), and non-canonical BAF (ncBAF). ARID1A and ARID1B are paralog subunits that specifically nucleate the assembly of cBAF complexes and are frequently co-mutated in highly aggressive dedifferentiated/undifferentiated endometrial carcinomas (DDEC/UECs). Here, in cellular models and primary human tumors, we find that ARID1A/B deficiency-mediated cBAF loss results in increased ncBAF and PBAF biochemical abundance and chromatin-level functions to maintain the DDEC oncogenic state. Further, treatment with clinical-grade SMARCA4/2 ATPase inhibitors markedly attenuates DDEC cell proliferation and tumor growth in vivo and synergizes with carboplatin-based chemotherapy to extend survival. These findings reveal the oncogenic contributions of shifted mSWI/SNF family complex stoichiometry and resulting gene regulatory dysregulation and suggest therapeutic utility of mSWI/SNF small molecule inhibitors in DDEC/UEC and other cBAF-disrupted cancer types.
Insights
Loss of ARID1A/B subunits in endometrial cancer shifts chromatin remodeler complexes, promoting tumor growth. Targeting SMARCA4/2 with inhibitors offers a potential therapeutic strategy, enhancing chemotherapy effectiveness.
Area of Science:
- Cellular biology
- Molecular oncology
- Epigenetics
Background:
- Mammalian SWI/SNF (mSWI/SNF) complexes are crucial chromatin remodelers regulating gene expression.
- ARID1A and ARID1B subunits are key for canonical BAF (cBAF) assembly and are often mutated in dedifferentiated/undifferentiated endometrial carcinomas (DDEC/UECs).
Purpose of the Study:
- To investigate the functional consequences of ARID1A/B loss in DDEC/UECs.
- To explore the therapeutic potential of targeting mSWI/SNF complexes in these cancers.
Main Methods:
- Analysis of cellular models and primary human tumor samples.
- Biochemical assays to assess mSWI/SNF complex abundance and chromatin occupancy.
- In vivo studies using SMARCA4/2 ATPase inhibitors and carboplatin chemotherapy.
Main Results:
- ARID1A/B deficiency leads to reduced cBAF and increased Polybromo-associated BAF (PBAF) and non-canonical BAF (ncBAF) complexes.
- This shift in complex stoichiometry promotes the DDEC oncogenic state.
- SMARCA4/2 ATPase inhibitors significantly reduced DDEC cell proliferation and tumor growth, synergizing with carboplatin.
Conclusions:
- Shifted mSWI/SNF complex stoichiometry contributes to oncogenesis in DDEC/UECs.
- mSWI/SNF small molecule inhibitors represent a promising therapeutic avenue for DDEC/UECs and other cancers with cBAF disruptions.
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