Towards optimising and standardising donor screening for faecal microbiota transplantion

Crystal S Liu1, Blair Merrick2, Zahra S Taboun3

  • 1Division of Gastroenterology, University of Alberta Faculty of Medicine & Dentistry, Edmonton, Alberta, Canada.

Gut
|November 26, 2025
PubMed

Insights

Rigorous donor screening is crucial for safe fecal microbiota transplantation (FMT). This review evaluates evidence for current protocols, aiming to develop a streamlined, evidence-based approach to improve donor selection and patient safety in FMT services.

Area of Science:

  • Microbiology
  • Gastroenterology
  • Infectious Diseases

Background:

  • Donor screening is critical for fecal microbiota transplantation (FMT) safety, preventing pathogen transmission.
  • Existing FMT donor screening protocols lack a strong evidence base, leading to potential risks or resource strain.
  • Documented FMT-associated infections highlight the severe consequences of inadequate donor screening.

Purpose of the Study:

  • To critically evaluate the evidence supporting current FMT donor screening protocols.
  • To compare screening methodologies across major guidelines and manufacturers.
  • To develop a rational and streamlined evidence-based approach for FMT donor screening.

Main Methods:

  • Comparative analysis of major FMT guidelines and manufacturer protocols.
  • Critical appraisal of literature on pathogen transmission dynamics in FMT.
  • Delphi process involving an expert panel to refine screening strategies.
  • Exploration of future directions, including emerging pathogens and new technologies.

Main Results:

  • Significant variability exists in screened pathogens, laboratory assays, and clinical criteria across current FMT donor screening protocols.
  • Evidence for the transmission potential of many screened pathogens in FMT is limited.
  • An expert consensus was reached on a rational and streamlined screening approach.

Conclusions:

  • Developing evidence-based FMT donor screening protocols is essential to balance patient safety with resource management.
  • Transparency in donor recruitment, screening, monitoring, and record-keeping is vital.
  • Future FMT donor screening should consider emerging pathogens and advanced technologies like metagenomics.