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Updated: Jan 10, 2026

Noninvasive In Vivo Small Animal MRI and MRS: Basic Experimental Procedures
Published on: October 20, 2009
A practical prescription for magnetic resonance microscopy in a horizontal bore magnet
Bibek Dhakal1,2, Benjamin M Hardy3,4,5, Adam W Anderson3,6,7
1Vanderbilt University Institute of Imaging Science, Vanderbilt University Medical Center, Nashville, TN, USA. bibek.dhakal@vanderbilt.edu.
Abstract:
Magnetic resonance microscopy (MRM) produces high spatial resolution proton images of biological tissues, plants, and porous media, revealing microstructural details and contrast unattainable by other means. A major challenge in MRM is the low signal-to-noise ratio at high spatial resolutions, as smaller voxels produce smaller MR signals. This necessitates the use of highly sensitive microcoils, high-performance gradient systems, and high magnetic fields. Here, we present a step-by-step prescription for fabricating a cost-effective, flexible microimaging probe system compatible with horizontal bore high-field MRI systems. We demonstrate performance at 15.2 T by acquiring high-resolution (15 μm isotropic voxels) images of ex vivo mouse spinal cord (gray matter SNR 38; 46 h scan) and hippocampus (SNR 67; 45 h scan), clearly resolving microstructural features. Shorter imaging times are possible using compressed sampling. The flexible probe design supports solenoid diameters ranging from < 1 mm up to 10 mm in diameter, offering flexibility for imaging a variety of biological samples at high resolution.
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