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Updated: Jan 10, 2026

Oral Biofilm Sampling for Microbiome Analysis in Healthy Children
Published on: December 31, 2017
Compositional Changes and Comparative Analysis of Oral Microbial Community During the Formation of Canine Dental
Liwei Zeng1, Lei Shi2, Yufei Yang2
1College of Veterinary Medicine, China Agricultural University, Beijing 100193, China.
Abstract:
Periodontal disease remains a prevalent clinical condition in dogs, significantly impacting the quality of life of affected animals. Dental calculus is closely associated with periodontal disease, primarily because it serves as a reservoir for dental plaque and bacterial toxins, that contribute to gingival inflammation. To investigate the changes in the oral microbiome during the formation of dental calculus, a total of 30 dogs were enrolled and divided into three groups: healthy dogs (H, n = 10), provided tooth surface samples; dogs with dental plaque (P, n = 10) supplied plaque samples; and dogs with dental calculus (C, n = 10) provided calculus samples. DNA was subsequently extracted from all collected samples and subjected to PacBio sequencing. The results revealed significant differences in the composition and diversity of the oral microbiome between the plaque and calculus groups compared to the healthy group. As calculus gradually formed, the relative abundance of Pseudomonadota decreased significantly, while the proportions of Bacillota, Actinomycetota, Campylobacterota, and Thermodesulfobacteriota increased markedly. Bacteroides pyogenes and Peptostreptococcus canis were identified as potential biomarkers associated with calculus formation, whereas Conchiformibius steedae and Pasteurellaceae bacterium canine oral taxon 271 may serve as indicators of healthy periodontal tissue. Functional prediction analysis revealed a notable reduction in the ABC transporter pathway in the oral microbiota of dogs with dental calculus compared to the healthy group. In conclusion, our study has revealed the compositional changes in the oral microbial community and potential metabolic pathways during the formation of dental calculus in dogs. These findings provide a theoretical foundation for the identification of potential microbial biomarkers and for developing preventive and therapeutic strategies for canine periodontal disease.
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