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Machine Learning Framework for Multi-Endpoint Quantum Dot Toxicity Prediction with Organoid Validation and Drug
Jiafu Yang1, Dayu Hu1, Pengcheng Xing1
1Key Laboratory of Environmental Medicine and Engineering of Ministry of Education, School of Public Health, Southeast University, Nanjing 210009, China.
Toxics
|November 27, 2025
Summary
This study developed a framework to predict quantum dot (QD) toxicity using machine learning, validated with brain organoids. Findings guide safer nanomaterial development and identify Carfilzomib as a potential intervention.
Area of Science:
- Nanotechnology
- Toxicology
- Biomedical Engineering
Background:
- Quantum dots (QDs) offer unique properties for biomedicine and optoelectronics.
- Their nanoscale nature and surface chemistry raise concerns about potential toxicity.
- A systematic approach is needed for comprehensive QD safety assessment.
Purpose of the Study:
- To establish a multi-endpoint framework for evaluating quantum dot toxicity.
- To build and validate machine learning models for predicting QD-induced toxic effects.
- To identify potential intervention strategies for mitigating QD toxicity.
Main Methods:
- Collected physicochemical properties and toxicity endpoints (cell death, inflammation, oxidative stress) of various QDs.
- Developed machine learning models (Random Forest, XGBoost, KNN, SVM) for toxicity prediction.
- Validated predictions using brain organoids and employed SHAP analysis for feature importance.
Main Results:
- Machine learning models successfully predicted QD toxicity.
- Exposure dose and particle size were identified as key drivers of toxicity across models.
- Zeta potential and optical properties influenced specific toxicity endpoints.
- Carfilzomib showed strong binding to core targets, indicating potential as an intervention drug.
Conclusions:
- The developed framework provides a systematic approach for evaluating multi-endpoint QD toxicity.
- This study offers a robust method for nanomaterial safety assessment and intervention strategy development.
- Findings contribute to the safe application of quantum dots in various fields.

