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Colloidal Crystals Engineered with DNA from Supramolecular Programmable Atom Equivalents with Stimuli-Responsive
Yi Xie1, Cuizheng Zhang1, Qinsi Xiong1
1Department of Chemistry and International Institute for Nanotechnology, Northwestern University, Evanston, Illinois 60208, United States.
Journal of the American Chemical Society
|November 27, 2025
Summary
Researchers developed new DNA-nanoparticle building blocks called programmable atom equivalents (PAEs). These PAEs enable precise control over colloidal crystal structures using chemical stimuli, offering a novel strategy for materials engineering.
Area of Science:
- Materials Science
- Nanotechnology
- Supramolecular Chemistry
Background:
- Colloidal crystal engineering relies on DNA-functionalized nanoparticles (programmable atom equivalents or PAEs).
- Traditional methods use DNA-DNA interactions to direct colloidal crystallization.
- A need exists for alternative strategies to control these self-assembling systems.
Purpose of the Study:
- To synthesize and characterize novel micellar PAEs based on DNA-modified perylene diimides.
- To investigate the assembly of these micellar PAEs with gold nanoparticle PAEs into colloidal crystals.
- To explore chemical stimuli for modulating colloidal crystal structures.
Main Methods:
- Synthesis and characterization of DNA-modified perylene diimide micellar PAEs.
- Assembly with gold nanoparticle PAEs to form colloidal crystals.
- Structural analysis using electron microscopy, UV-vis spectroscopy, and synchrotron small-angle X-ray scattering.
- Investigation of disassembly using anionic aromatic molecules.
- Computational modeling including molecular dynamics and first-principles calculations.
Main Results:
- Spherical micellar PAEs were successfully synthesized and characterized.
- These micellar PAEs assembled with gold nanoparticle PAEs into Body-Centered Cubic (BCC) colloidal crystal lattices.
- Anionic aromatic molecules were shown to disrupt micellar PAEs, leading to colloidal crystal disassembly.
- Computational studies indicated that PAE core assembly is independent of DNA valency and sequence.
Conclusions:
- Introduced a new class of micellar PAEs for colloidal crystal engineering.
- Demonstrated a novel strategy for controlling colloidal crystal structures via external chemical stimuli.
- Highlighted the potential for precise modulation of self-assembled nanomaterials.

