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Updated: Jan 10, 2026

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
LLM-supported collaborative ontology design for data and knowledge management platforms.
Janis Kampars1, Guntis Mosans1, Tushar Jogi2
1Information Technology Institute, Faculty of Computer Science, Information Technology and Energy, Riga, Latvia.
This study introduces an ontology engineering framework using Large Language Models (LLMs) to accelerate scientific data management. The developed Hydrogen-Material Interaction Ontology (HMIO) ensures FAIR data principles for materials science research.
Area of Science:
- Materials Science
- Data Science
- Computational Science
Background:
- Managing large, diverse scientific data is challenging, hindering interoperability and progress.
- Existing ontology engineering frameworks require significant expert time and effort.
- The HyWay project focuses on hydrogen-materials interactions, requiring robust data management.
Purpose of the Study:
- To present an extended ontology engineering framework integrating Large Language Models (LLMs) for accelerated development.
- To develop a domain-specific ontology for hydrogen-materials interactions.
- To integrate the ontology into a Data and Knowledge Management Platform (DKMP) for FAIR data compliance.
Main Methods:
- Extension of the NeOn iterative ontology engineering framework.
- Integration of Large Language Models (LLMs) for task acceleration.
- Application within the HyWay project to develop the Hydrogen-Material Interaction Ontology (HMIO).
- Integration of HMIO into a Data and Knowledge Management Platform (DKMP).
Main Results:
- Development of the Hydrogen-Material Interaction Ontology (HMIO) covering 29 experimental and 14 simulation types.
- Successful integration of HMIO into the DKMP, enabling automated generation of FAIR data entry forms.
- Demonstration of HMIO compliance by design for captured data.
Conclusions:
- A hybrid human-machine workflow for ontology engineering is effective and efficient.
- This approach provides a scalable solution for creating and operationalizing complex scientific ontologies.
- The methodology advances data-driven research in materials science and other complex domains.
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