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High-throughput two-photon volumetric brain imaging in freely moving mice
Long Qian1,2, Yaling Liu1,2,3, Yalan Chen2,4
1Beijing Institute for Brain Research, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.
Nature Communications
|November 29, 2025
Summary
Researchers developed a miniature Bessel-beam two-photon microscope (miniBB2p) for high-throughput neural imaging. This new microscope enables large-scale, subcellular resolution calcium imaging in freely moving mice during behavior.
Area of Science:
- Neuroscience
- Biomedical Engineering
- Microscopy
Background:
- Imaging neural activity in large volumes at subcellular resolution while allowing natural animal behavior is challenging.
- Existing methods often restrict animal movement or lack the necessary scale and resolution.
Purpose of the Study:
- To develop a high-throughput miniature Bessel-beam two-photon microscope (miniBB2p) for advanced neural imaging.
- To enable imaging of neural activity across large volumes at subcellular resolution in freely moving animals.
Main Methods:
- Development of a miniature Bessel-beam two-photon microscope (miniBB2p).
- Utilized Bessel beam illumination for deep tissue penetration and reduced scattering.
- Demonstrated imaging of calcium dynamics in neurons and dendrites over a 420 × 420 × 80 μm³ volume.
Main Results:
- Successfully performed large-scale recordings of calcium activities from over 1000 neurons simultaneously.
- Imaged neural activity in the anterior cingulate cortex and secondary motor cortex of freely moving mice.
- Demonstrated miniBB2p's capability across various behavioral paradigms.
Conclusions:
- The miniBB2p facilitates precise monitoring of neural activity across large populations in a 3D volume in freely moving animals.
- This technology advances the design of miniature multiphoton microscopes for neuroscience research.
- The miniBB2p system opens new avenues for studying brain function during complex behaviors.

