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Evaluating XAI techniques under class imbalance using CPRD data.

Teena Rai1, Jun He1, Jaspreet Kaur2

  • 1Department of Computer Science, Nottingham Trent University, Nottingham, United Kingdom.

Frontiers in Artificial Intelligence
|December 1, 2025
PubMed
Summary
This summary is machine-generated.

Class imbalance in healthcare data significantly impacts the reliability of eXplainable Artificial Intelligence (XAI) methods like LIME and SHAP. Ensuring consistent model explanations is crucial for trustworthy AI in clinical decision support systems.

Keywords:
CPRDLIMEPDPSHAPclass imbalanceconsistencyeXplainable AIevaluation

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Area of Science:

  • Healthcare AI
  • Machine Learning Interpretability
  • Clinical Decision Support

Background:

  • eXplainable Artificial Intelligence (XAI) is critical for regulatory compliance and trust in healthcare AI.
  • Post hoc XAI techniques (LIME, SHAP, PDPs) are widely used for interpreting machine learning models in healthcare.
  • The reliability of XAI techniques, especially concerning class imbalance in medical data, is not fully understood.

Purpose of the Study:

  • To design a framework for evaluating the impact of class imbalance on the consistency of XAI explanations.
  • To assess how class imbalance affects explanations from LIME, SHAP, and PDPs across different machine learning models.
  • To investigate the reliability of XAI techniques in real-world clinical data scenarios with skewed class distributions.

Main Methods:

  • Comparative evaluation of LIME, SHAP, and PDPs using UK primary care data (CPRD).
  • Training XGBoost, Random Forest, and MLP models to predict lung cancer risk on both imbalanced and balanced datasets.
  • Assessing explanation consistency by comparing models trained on imbalanced versus balanced data.

Main Results:

  • Class imbalance significantly affects the reliability and consistency of LIME and SHAP explanations.
  • Theoretical analysis explains why LIME and SHAP explanations change with varying class distributions.
  • Partial Dependence Plots (PDPs) also show noticeable variations for clinically relevant features under class imbalance.

Conclusions:

  • Current XAI techniques exhibit vulnerability when applied to imbalanced medical datasets.
  • Consistent model explanations are essential for the trustworthy deployment of machine learning in healthcare.
  • Addressing class imbalance is crucial for reliable XAI in clinical applications.