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Simultaneous fMRI and Electrophysiology in the Rodent Brain
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Using Generative Adversarial Networks to eliminate RF and gradient interference in neurophysiology signals recorded

Yunhan Li, Aleksandra Bortel, Fadi Ayad

    Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
    |December 3, 2025
    PubMed
    Summary

    We developed a Generative Adversarial Network (GAN) model to remove gradient and radiofrequency (RF) artifacts from simultaneous functional MRI and neurophysiology recordings, preserving neural signal integrity.

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    Area of Science:

    • Neuroimaging
    • Neurophysiology
    • Biomedical Engineering

    Background:

    • Simultaneous functional MRI (fMRI) and neurophysiology recordings are crucial for understanding brain function.
    • Gradient switching and radiofrequency (RF) pulses in fMRI introduce significant artifacts into neurophysiology signals.
    • Current artifact removal methods like average artifact subtraction (AAS) and principal component analysis (PCA) often leave residual artifacts and cause signal loss.

    Purpose of the Study:

    • To develop a novel blind source separation model for removing gradient and RF artifacts from simultaneous fMRI-neurophysiology data.
    • To improve the quality of neurophysiology signals recorded during fMRI acquisition.
    • To overcome limitations of existing artifact removal techniques.

    Main Methods:

    • Proposed a Generative Adversarial Network (GAN) based blind source separation model.
    • Incorporated identity loss to preserve neural signal integrity.
    • Utilized GAN loss and frequency loss for time and frequency domain denoising.

    Main Results:

    • The GAN model effectively removed gradient and RF artifacts from both simulated and empirical data.
    • Neural signal integrity was maintained, outperforming traditional AAS and PCA methods.
    • Demonstrated successful blind source separation without requiring ground truth denoised data.

    Conclusions:

    • The proposed GAN-based method offers a superior approach for artifact removal in simultaneous fMRI-neurophysiology recordings.
    • This technique enhances the reliability of neurophysiological data acquired during fMRI.
    • The method holds significant potential for advancing research into neural activity and hemodynamic responses.