Antibody-based targeted protein degradation: Mechanisms, challenges and future directions

Yujing Li1, Wanpeng Yu2, Xiyao Wang3

  • 1Department of Hepatobiliary and Pancreatic Surgery, The Affiliated Hospital of Qingdao University, Qingdao, China; Qingdao Cancer Institute, Qingdao, China; Qingdao Medical College, Qingdao University, Qingdao, China.

Insights

Antibody-based targeted protein degradation (TPD) offers a novel strategy to eliminate disease-driving proteins, overcoming limitations of conventional therapies. This approach utilizes antibody specificity to direct degradation, expanding therapeutic potential for various diseases.

Area of Science:

  • Biochemistry and Molecular Biology
  • Immunology
  • Drug Discovery and Development

Background:

  • Conventional cancer therapies like chemotherapy and immunotherapy face challenges including toxicity, poor selectivity, and drug resistance.
  • Targeted protein degradation (TPD) has emerged as a promising strategy to eliminate disease-causing proteins, including those previously considered undruggable.
  • While small-molecule degraders (e.g., PROTACs) are established, antibody-based TPD presents a complementary and rapidly advancing frontier.

Purpose of the Study:

  • To review the mechanisms, structural innovations, and therapeutic applications of antibody-based TPD technologies.
  • To highlight emerging preclinical evidence and discuss the strengths and limitations of various antibody-guided degradation modalities.
  • To identify translational barriers and propose future research directions for antibody-based degraders.

Main Methods:

  • Review of existing literature on antibody-based targeted protein degradation.
  • Analysis of different antibody-guided degradation modalities (e.g., TRIM-Away, LYTACs, AbTACs, GlueTACs).
  • Evaluation of preclinical evidence and therapeutic applications across various diseases.

Main Results:

  • Antibody-based TPD leverages antibody specificity for precise degradation of intracellular, cell-surface, and extracellular proteins.
  • Multiple antibody-based TPD modalities have been developed, offering versatile platforms for protein elimination.
  • These technologies extend degradation strategies beyond the cytosol, opening new therapeutic avenues.

Conclusions:

  • Antibody-based TPD represents a transformative approach with significant potential to overcome limitations of current therapies.
  • Further research and overcoming translational barriers are crucial for clinical implementation of these next-generation therapeutics.
  • Antibody-guided degraders hold promise for reshaping treatment paradigms in cancer, autoimmune, and neurodegenerative diseases.

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