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Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
Collaborative framework on responsible AI in LLM-driven CDSS for precision oncology leveraging real-world patient
Sonja Mathes1,2, Dyke Ferber3,4,5, Tobias Dreyer6,7
1TUM School of Medicine and Health, Department of Dermatology, Technical University of Munich, Munich, Germany. sonja.mathes@mri.tum.de.
Large language models (LLMs) can structure real-world data for precision oncology. A new framework guides responsible LLM integration, addressing data bottlenecks and advancing biomarker discovery.
Area of Science:
- Oncology
- Biomedical Informatics
- Artificial Intelligence
Background:
- Precision oncology relies on real-world data for biomarker and therapy identification.
- Unstructured data presents a significant bottleneck in current precision oncology practices.
- Large language models (LLMs) offer potential solutions for data structuring challenges.
Purpose of the Study:
- To propose a framework for the responsible integration of LLMs into precision oncology.
- To address current data-related bottlenecks in precision oncology research and application.
- To guide multidisciplinary experts in leveraging LLMs for enhanced precision cancer care.
Main Methods:
- Development of a framework for responsible LLM integration, co-created by multidisciplinary experts.
- Establishment of five thematic dimensions and ten guiding principles for LLM implementation.
- Application of the framework to a thought experiment involving uterine carcinosarcoma data.
Main Results:
- The proposed framework provides a structured approach to utilizing LLMs in precision oncology.
- The framework addresses key challenges in handling unstructured real-world data.
- Illustrative application demonstrates the framework's utility in a specific cancer type.
Conclusions:
- Responsible LLM integration is crucial for advancing precision oncology.
- The framework facilitates the effective use of LLMs for biomarker discovery and therapy identification.
- This approach supports overcoming data bottlenecks and enhances cancer care through AI.
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