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Detection of Rare Mutations in CtDNA Using Next Generation Sequencing
Published on: August 24, 2017
Personalized ctDNA detection and genomic profiling in the NeoRHEA Study.
Alexandra Stanciu1, Elisa Agostinetto1, Andreas Papagiannis1
1Université Libre de Bruxelles (ULB), Hôpital Universitaire de Bruxelles (HUB), Institut Jules Bordet, Rue Meylemeersch 9, Bruxelles, Belgium.
Circulating tumor DNA (ctDNA) shows promise for early HR+/HER2- breast cancer. Baseline ctDNA levels predicted poor response to neoadjuvant therapy, highlighting its potential as a predictive biomarker.
Area of Science:
- Oncology
- Molecular Diagnostics
- Genomics
Background:
- Circulating tumor DNA (ctDNA) is an emerging biomarker for early hormone receptor-positive (HR+), HER2-negative breast cancer.
- The NeoRHEA trial investigated neoadjuvant palbociclib plus endocrine therapy in this patient population.
Purpose of the Study:
- To assess the utility of ctDNA as a biomarker in early HR+/HER2- breast cancer treated with neoadjuvant therapy.
- To correlate ctDNA dynamics and genomic alterations with treatment response.
Main Methods:
- The RaDaR assay was used to detect ctDNA in plasma samples from the NeoRHEA trial.
- Samples were collected at multiple time points: pre-treatment, post-cycle 1, pre-surgery, and 1 month post-surgery.
- Genomic alterations (MYC, PIK3CA, FAT1) were analyzed.
Main Results:
- Baseline ctDNA was detected in 55% of patients, decreasing significantly during treatment and becoming undetectable post-surgery.
- Higher baseline ctDNA was associated with grade 3 tumors and higher residual cancer burden (RCB) 3.
- Specific genomic alterations (MYC, PIK3CA, FAT1) were enriched in different response groups.
Conclusions:
- Baseline ctDNA detection is a significant predictor of poor response to neoadjuvant palbociclib plus endocrine therapy in HR+/HER2- breast cancer.
- ctDNA serves as a valuable biomarker for guiding treatment decisions in this breast cancer subtype.
- Further research into ctDNA dynamics and genomic profiling can refine treatment strategies.
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