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Updated: Apr 13, 2026

Culturing and Maintaining Clostridium difficile in an Anaerobic Environment
Published on: September 15, 2013
Manufacture of Clostridioides difficile Spores for Experimental Infection of Human Volunteers
Annefleur D O Hensen1, Céline Harmanus1, Christine Voorvelt1
1Leiden University Center for Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands.
Background:
Infections with Clostridioides difficile remain a significant global healthcare problem for which novel (preventive) treatment strategies are urgently needed. Controlled human infection models (CHIMs) can contribute to a better understanding of the disease and accelerate (novel) medicinal product development.
Methods:
A robust production process for C difficile spores for experimental human administration was implemented. Direct-release capsules containing viable C difficile spores were formulated. The manufacturing process aligns with Good Manufacturing Practice (GMP) guidelines, including quality controls and release by a Qualified Person (QP).
Results:
Selected nontoxigenic and toxigenic C difficile strains were used to create a master cell bank and working cell bank from which multiple batches of purified active substance were produced. Substance was then used to manufacture the final active product. The active product and its intermediate products passed all quality controls for identity, potency, purity and safety, and were individually released by the QP. Stability of active substance and product is confirmed up to 12 months.
Conclusions:
Although there are no clear standardized international guidelines for challenge material production, we demonstrate that it is feasible to produce C difficile human challenge material for small-scale application in CHIM trials. This application of GMP principles to an unconventional production process of a bacterial spore-forming anaerobic challenge agent is an example for the production of challenge material as described in the auxiliary medicinal product guidelines of the European Medicines Agency and the US Food and Drug Administration.

