Related Experiment Video
Updated: Jan 9, 2026

Analyzing Protein Dynamics Using Hydrogen Exchange Mass Spectrometry
Published on: November 29, 2013
A-H···π Hydrogen Bonds-Where Are Proton Acceptor Sites Located?
1Polimero eta Material Aurreratuak: Fisika, Kimika eta Teknologia, Kimika Fakultatea, Euskal Herriko Unibertsitatea UPV/EHU & Donostia International Physics Center (DIPC), PK 1072, 20080 Donostia, Spain.
This study analyzes A-H···π hydrogen bonds, categorizing interactions based on the A-H bond
Area of Science:
- Physical Chemistry
- Supramolecular Chemistry
- Crystallography
Background:
- A-H···π hydrogen bonds are crucial non-covalent interactions.
- Categorizing these bonds is complex due to diverse geometries.
- Understanding these interactions is key in molecular recognition and crystal engineering.
Purpose of the Study:
- To analyze and categorize different types of A-H···π hydrogen bonds.
- To investigate the geometric and electronic features of these interactions.
- To explore the role of π-electron systems as proton acceptors.
Main Methods:
- Searches in the Cambridge Structural Database for specific A-H···π interactions.
- Computational analysis using MP2/6-311++G(d,p) level of theory.
- Validation of results using Natural Bond Orbital (NBO) and Quantum Theory of Atoms in Molecules (QTAIM) methods.
Main Results:
- Identified two extreme categories of A-H···π interactions: center-directed and off-center-directed.
- Observed interactions involving π-systems like triple C≡C bonds, benzene rings, and cyclopentadienyl anions.
- Computational data supports the observed structural findings, revealing nuances in bond characteristics.
Conclusions:
- A-H···π hydrogen bonds exhibit a spectrum of geometries beyond simple categorization.
- π-electron systems, particularly unsaturated hydrocarbons and aromatic rings, are effective proton acceptors.
- Computational and database studies provide complementary insights into the nature of these interactions.
More Related Videos
10:10Neutron Crystallography Data Collection and Processing for Modelling Hydrogen Atoms in Protein Structures
Published on: December 1, 2020
06:35Construction and Systematical Symmetric Studies of a Series of Supramolecular Clusters with Binary or Ternary Ammonium Triphenylacetates
Published on: February 15, 2016
Related Concept Videos
Hydrogen Bonds
Hydrogen Bonds
Hydrogen Bonds Control the World!
Because hydrogen has very weak electronegativity when it binds with a strongly electronegative atom, such as oxygen or nitrogen, electrons in the bond are unequally shared....
Basicity of Aliphatic Amines
To measure the basicity of amines, two conventions are generally used. The first defines Kb as the basicity constant for the deprotonation reaction of water by the amine, as presented in Figure 1. Conventionally, lower Kb indicates higher...
Amino acids
Introduction to Chemical Bonds
The electrons of the outermost energy level determine the energetic stability of the atom and its tendency to form chemical bonds with other atoms. The innermost electron shell has a maximum capacity of two electrons, but the next two electron shells can each have a maximum of eight electrons. This is known as the octet rule, which states that, with the exception of the innermost shell, atoms are most stable energetically when they have eight electrons in their valence shell, the...
Hybridization of Atomic Orbitals II