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Purification and Aggregation of the Amyloid Precursor Protein Intracellular Domain
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Stress-Induced Antibody Aggregates: Insights from Native SEC-MS with Postcolumn Denaturation
Daniil Ivanov1, Christine Lee1, Dennis Delgado1
1Sanofi R&D, Framingham, Massachusetts 01701, United States.
Journal of the American Society for Mass Spectrometry
|December 9, 2025
Summary
This study presents a platform method using native SEC-MS to characterize high-molecular-weight species (HMWS) in stressed monoclonal antibody (mAb) therapeutics. The method effectively distinguishes between covalent and noncovalent aggregates, aiding in degradation pathway studies.
Area of Science:
- Biopharmaceutical Analysis
- Protein Chemistry
- Analytical Chemistry
Background:
- Characterizing high-molecular-weight species (HMWS) is crucial for monoclonal antibody (mAb) therapeutic development.
- Native mass spectrometry (MS) is a powerful tool for HMWS analysis, offering high accuracy and sensitivity.
- Routine implementation of native MS for HMWS is challenging due to data acquisition and interpretation complexities.
Purpose of the Study:
- To develop and evaluate a platform method for native SEC-MS characterization of HMWS in stressed mAb samples.
- To provide a practical guideline for incorporating native SEC-MS into degradation pathway studies.
- To enhance the understanding of stress-induced antibody aggregation.
Main Methods:
- Systematic evaluation of a platform method for native SEC-MS.
- Utilized conventional quadrupole time-of-flight mass spectrometry without hardware modifications.
- Applied postcolumn denaturation (PCD) to differentiate aggregate types.
Main Results:
- Successfully characterized aggregates in a model IgG4 antibody under thermal and low-pH stress.
- The developed platform method demonstrated wide accessibility and effectiveness.
- Postcolumn denaturation enabled clear identification of covalent versus noncovalent aggregates.
Conclusions:
- The developed native SEC-MS platform method is a robust and versatile tool for HMWS characterization.
- This approach facilitates the study of degradation pathways in mAb therapeutics.
- The method can improve the development of safe and effective monoclonal antibody therapies.

