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Isolation of Ribosome Bound Nascent Polypeptides in vitro to Identify Translational Pause Sites Along mRNA
Published on: July 6, 2012
Translation-Promoting Effects of RNA Template Overhangs in the Absence of Ribosomes
Nikolaos Giannakopoulos1, Martin Rentschler1, Clemens Richert1
1Institute of Organic Chemistry, University of Stuttgart, 70569, Stuttgart, Germany.
Abstract:
Translation requires a complex set of biomacromolecules. How it evolved is an unsolved problem. Ribosome-free, single-nucleotide translation via coupling of 3'-aminoacylated RNA to 5'-phosphoramidate-linked RNAs was shown for very short peptides. It was unclear how this process could be induced at a specific locus, regulated, and expanded. Here we show that a triplex-forming template overhang accelerates ribosome-free translation and increases its yield. An NMR-monitored model study suggested that mixed anhydrides between carboxylates of amino acid residues and phosphates can contribute to efficient peptide coupling, strengthening proximity effects. Folding into triplexes at pH 6 enhances the template effect, and unfolding at pH 8 suppresses it, suggesting a simple way of achieving "inducible translation" in a system devoid of biomacromolecules. Under mild acidic conditions, doubly RNA-linked peptides up to octamers were formed in near-quantitative yield. Taken together, our data suggests that the growth of template strands not only allows for encoding more genetic information, but may also enhance translational fitness.
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